Name Modified Size Downloads / Week Status
simbac-release-11-09-2011.tar 2011-11-09 348.2 kB 0
simbac-release-10-01-2011.tar 2011-10-01 368.6 kB 0
README 2011-10-01 1.0 kB 0
Totals: 3 Items   717.8 kB
The SimBac package simulates bacterial genome evolution. Included files: sim-single-pop.pl: Simulating evolution of a single population sim-mixed-pop.pl: Simulating two populations, allowed to mix & recombine sim-isolated-pop.pl: Simulating two isolated populations, NOT allowed to mix & recombine make-coalescence-tree.pl: Post-simulation processing SimBac/CodonType.pm: Required module SimBac/CodonFreqTable.pm: Required module SimBac/RandCDS.pm: Required module SimBac/Convert.pm: Required module codon-usage-table.txt: Sample codon usage table sim-single-pop.config: Sample settings for simulating genome evolution in a single popualtion sim-mixed-pops.config: Sample settings for simulating divergence of two mixed popualtions sim-isolated-pops.config: Sample settings for simulating divergence of two isolated popualtions sample-output-gen-1000.pl: Sample alignment output External Dependencies: Moose BioPerl Math::Random::MT::Auto Algorithm::Numerical::Sample Statistics::Basic
Source: README, updated 2011-10-01

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