AutoPrime allows to rapidly design primers for real-time PCR measurement of eukaryotic expression.
By connecting to the EnsEMBL database gene structure information is used to find primers spanning exon borders. This way only expressed sequences are captured. Additionally mispriming on repetitive regions can be avoided using information from RepBase.

Features

  • Automated primer design
  • Quality control through detailed settings
  • Using well-known sources: Primer3, EnsEMBL, RepBase
  • Creating your primers since 2003
  • Website running as a service
  • Perl code available for local execution

Project Samples

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Operating Systems

Linux, BSD

Languages

English

Intended Audience

Science/Research, Advanced End Users

User Interface

Web-based, Command-line

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2007-04-26