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Home / Test Data
Name Modified Size InfoDownloads / Week
Parent folder
README.txt 2013-09-18 547 Bytes
0
targets_definition.bed 2013-09-18 3.9 MB
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sample_tumour.coverage.tar.gz 2013-09-18 183.2 MB
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sample_normal.coverage.tar.gz 2013-09-18 183.6 MB
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sample.baf 2013-09-18 2.1 MB
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Totals: 5 Items   372.8 MB 0 
sample_normal.coverage - Depth of coverage at each base of the matched normal
sample_tumour.coverage - Depth of coverage at each base of the tumour
sample.baf - BAFs of the tumour and normal samples
targets_definition.bed - BED format of the target definitions of the exome capture

To run ADTEx with Test Data:

python ADTEx.py -n /containing_folder/sample_normal.coverage -t /containing_folder/sample_tumour.coverage -b /containing_folder/targets_definition.bed -o /output_folder --baf /containing_folder/sample.baf --estimatePloidy -p --DOC
Source: README.txt, updated 2013-09-18