AccNET

AccNET: Accessory Genome Constellation Network.

Brought to you by: valfdz

Downloads: 0 This Week

Last Update: 2017-03-16

Get an email when there's a new version of AccNET

AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET collects phylogenetic and functional information in a network improving the analysis capability. Networks offer a new perspective of organism organization through elements acquired by horizontal gene transfers and not constricted by hierarchical structures.

AccNET has moved to GitHub Repository: https://github.com/valflanza/accnet

Features

Bioinformatics
Network
Comparative Genomics
Perl
NGS

Project Samples

Accessory genome network of 27 Escherichia coli .

Pangenome network of 250 Klebsiella spp plasmids

Accessory genome network of 25 Enterococcus faecium

Accessory genome network of 37 Escherichia coli B2

AccNET Screenshot 5

AccNET Screenshot 6

Project Activity

See All Activity >

Follow AccNET

AccNET Web Site

Other Useful Business Software

Fully Managed MySQL, PostgreSQL, and SQL Server Icon

Fully Managed MySQL, PostgreSQL, and SQL Server

Automatic backups, patching, replication, and failover. Focus on your app, not your database.

Cloud SQL handles your database ops end to end, so you can focus on your app.

Try Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of AccNET!

Additional Project Details

Registered

2016-01-18

Report inappropriate content

Full-stack observability with actually useful AI | Grafana Cloud

Our generous forever free tier includes the full platform, including the AI Assistant, for 3 users with 10k metrics, 50GB logs, and 50GB traces.

Built on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.

Create free account

Recommended Projects

GenomeView
GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet files can be loaded. This project has moved to GitHub: https://github.com/GenomeView/genomeview
OmicsSuite
OmicsSuite: a suite for multi-omics analysis and visualization.
gentreat
GenTreat is a computational pipeline with an intuitive graphical interface, was developed for automated hybrid assembly of prokaryotic genomes, performs assembly using two assemblers, merges the results, and then orders and annotates the assembled genome. Validation using raw reads from 61 organisms demonstrated that is a viable alternative for automated hybrid assembly, eliminating the need for using extensive command lines.
Biogenesis
Biogenesis is an artificial life program that simulates the processes involved in the evolution of organisms. It shows colored segment based organisms that mutate and evolve in a 2D environment. Biogenesis is based on Primordial Life.
diva
Diva is a command-line tool for dispersal-vicariance analysis, a simple method for inferring the distributional history of organisms (Ronquist, F. 1997. Systematic Biology 46:193-201).