AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET collects phylogenetic and functional information in a network improving the analysis capability. Networks offer a new perspective of organism organization through elements acquired by horizontal gene transfers and not constricted by hierarchical structures.

AccNET has moved to GitHub Repository: https://github.com/valflanza/accnet

Features

  • Bioinformatics
  • Network
  • Comparative Genomics
  • Perl
  • NGS

Project Samples

Play Video Accessory genome network of 27 Escherichia coli . Pangenome network of 250 Klebsiella spp plasmids Accessory genome network of 25 Enterococcus faecium Accessory genome network of 37 Escherichia coli B2 AccNET Screenshot 5 AccNET Screenshot 6

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Additional Project Details

Registered

2016-01-18
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