AccNET

AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET collects phylogenetic and functional information in a network improving the analysis capability. Networks offer a new perspective of organism organization through elements acquired by horizontal gene transfers and not constricted by hierarchical structures.

AccNET has moved to GitHub Repository: https://github.com/valflanza/accnet

Features

Bioinformatics
Network
Comparative Genomics
Perl
NGS

Project Samples

Accessory genome network of 27 Escherichia coli .

Pangenome network of 250 Klebsiella spp plasmids

Accessory genome network of 25 Enterococcus faecium

Accessory genome network of 37 Escherichia coli B2

Project Activity

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