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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| abacus_dist_2016Jul20.zip | 2016-07-21 | 1.5 MB | |
| abacus.jar | 2016-07-21 | 4.4 MB | |
| README.abacus.txt | 2013-02-14 | 2.0 kB | |
| abacus_dist_2013Feb14.zip | 2013-02-14 | 1.4 MB | |
| abacus_dist_2012Nov09.zip | 2012-11-09 | 1.4 MB | |
| abacus-M_dist_2012Aug30.zip | 2012-08-30 | 831.5 kB | |
| abacusM.jar | 2012-08-30 | 1.7 MB | |
| uniprotMapper.jar | 2011-09-20 | 18.9 kB | |
| abacus_sample_data.zip | 2011-08-31 | 21.3 MB | |
| Abacus_Manual.pdf | 2011-08-19 | 1.9 MB | |
| refseqMapper.jar | 2011-01-03 | 12.7 kB | |
| Totals: 11 Items | 34.4 MB | 1 |
Abacus README
Updated: 2013-Feb-14
If you need help with any aspect of Abacus, please use the help forum on Google-Discussions at:
http://groups.google.com/group/abacus-support
Updated Abacus with a few minor bug fixes and speed improvements.
Abacus no longer requires a FASTA file to run. If you do not provide a FASTA file, Abacus will report
zeros for all of the protein lengths. You still need a FASTA file for NSAF results.
AbacusM:
- This is a NEW version of Abacus specifically designed to run on the MySQL database instead of HyperSQL.
- AbacusM was created for dealing with extremely large data sets. For example: 57 Thermo-Velos experiments.
- While AbacusM is not faster than the original Abacus, it is more likely to run to completion with these
extremely large datasets.
- In order to use AbacusM you *must* already have a working installation of MySQL with an existing account.
Contact the support forum if you need help with this.
Files:
refseqMapper.jar
Executable JAR that retrieves gene symbols for REFSEQ protein identifiers.
This program only runs on the command line and requires an internet connection.
abacus_sample_data.zip
Sample data set for Abacus tutorial.
uniprotMapper.jar
Executable JAR that retrieves gene symbols for UNIPROT protein identifiers.
This program only runs on the command line and requires an internet connection.
Abacus_Manual.pdf
A brief tutorial on how to use Abacus along with descriptions of the parameters and the output fields.
abacus.jar
The Abacus executable JAR file.
abacusM.jar
An executable version of Abacus designed to run with MySQL instead of HyperSQL.
abacus_dist_<DATE>.zip
The source code distribution to compile Abacus from scratch using ANT.
abacus-M_dist_<DATE>.zip
The source code distribution to compile Abacus-M from scratch using ANT.
Again:
If you need help with any aspect of Abacus, please use the help forum on Google-Discussions at:
http://groups.google.com/group/abacus-support