AAARF, written in PERL and with numerous adjustable parameters, identifies sequence overlaps in small shotgun sequence datasets and walks them out to create long pseudomolecules representing the most abundant repeats in a genome.

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License

GNU Library or Lesser General Public License version 2.0 (LGPLv2)

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Additional Project Details

Operating Systems

Mac

Languages

English

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Perl

Related Categories

Perl Genetic Algorithms, Perl Bio-Informatics Software

Registered

2007-06-29