Open Source Perl Genetic Algorithms

AAARF, written in PERL and with numerous adjustable parameters, identifies sequence overlaps in small shotgun sequence datasets and walks them out to create long pseudomolecules representing the most abundant repeats in a genome.

The SP is a tool is a tool to research for automatic synthesis of protocols using genetic programming. This tool will allow the construction of heuristics to apply techniques simulation and validation of models.

MicroGP (µGP, ugp) is a versatile optimizer able to outperform both human experts and conventional heuristics in finding the optimal solution of hard problems. It is an evolutionary algorithm since it mimics some principles of the Neo-Darwinian paradigm. ⚠️ A new version is available on https://github.com/squillero/microgp4

Generic System for Data Processing

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In silico evolution of biochemical networks using a genetic algorithm combined with a rule-based biochemical network model.

breve is a free, open-source 3D multi-agent simulation package designed for simulating decentralized systems and artificial life.