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Project Members:

• Joke Reumers (admin)
• Yves Wetzels (admin)

[Anastasios Mx]

Mr Yves,
I commented all commands exept the "map_vs_consensus.pl".
The ./run.sh returned on the VirVarSeq.log (I didnt redirect the output) this:
"
2019-08-07 19:27:12 ./map_vs_consensus.pl 3.0 Checking command line arguments ...
Undefined subroutine &Files::openFile called at ./map_vs_consensus.pl line 44.
2019-08-07 19:27:12 ./map_vs_consensus.pl 3.1 Get sample names from file [./testdata/samples.txt]...
"
Thanks!

[Yves Wetzels]

Hi Anastasios

not sure what is going wrong.
Can you cat the output of file './testdata/samples.txt'?

Kind Regards
Yves

Op wo 7 aug. 2019 om 18:31 schreef Anastasios Mx anastmx@users.sourceforge.net:

Mr Yves,
I commented all commands exept the "map_vs_consensus.pl".
The ./run.sh returned on the VirVarSeq.log (I didnt redirect the output)
this:
"
2019-08-07 19:27:12 ./map_vs_consensus.pl 3.0 Checking command line
arguments ...
Undefined subroutine &Files::openFile called at ./map_vs_consensus.pl
line 44.
2019-08-07 19:27:12 ./map_vs_consensus.pl 3.1 Get sample names from file
[./testdata/samples.txt]...
"
Thanks!

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Tarwestraat 5
B-2200 Noorderwijk

M (+32) 478 391 556
@yves.wetzels@wetzels-consulting.be

www.wetzels-consulting.be

[Anastasios Mx]

Yves,
These are the results:
110901_6_12_random_1
110901_6_12_random_2

Στις Πέμ, 8 Αυγ 2019 στις 2:06 μ.μ., ο/η Yves Wetzels yveswetzels@users.sourceforge.net έγραψε:

Hi Anastasios

not sure what is going wrong.
Can you cat the output of file './testdata/samples.txt'?

Kind Regards
Yves

Op wo 7 aug. 2019 om 18:31 schreef Anastasios Mx
anastmx@users.sourceforge.net %0Danastmx@users.sourceforge.net:

Mr Yves,
I commented all commands exept the "map_vs_consensus.pl".
The ./run.sh returned on the VirVarSeq.log (I didnt redirect the output)
this:
"
2019-08-07 19:27:12 ./map_vs_consensus.pl 3.0 Checking command line
arguments ...
Undefined subroutine &Files::openFile called at ./map_vs_consensus.pl
line 44.
2019-08-07 19:27:12 ./map_vs_consensus.pl 3.1 Get sample names from file
[./testdata/samples.txt]...
"
Thanks!

---

Sent from sourceforge.net because you indicated interest in
https://sourceforge.net/p/virtools/wiki/Home/

To unsubscribe from further messages, please visit
https://sourceforge.net/auth/subscriptions/

--

Tarwestraat 5
B-2200 Noorderwijk

M (+32) 478 391 556
@yves https://sourceforge.net/u/yves/.wetzels@wetzels-consulting.be

www.wetzels-consulting.be

---

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*Anastasios Mexias *

University of Thessaly Department of Computer Science and Biomedical
Informatics