Virmid VCF output

[Paul Wang]

Hi,

I am using Virmid v 1.1.0.

I believe there is an error in the VCF output header.

In the INFO lines:

INFO=<ID:NDP,Number=1,Type=Integer,Description="Read depth in control

sample">

INFO=<ID:NAC,Number=1,Type=Integer,Description="Allele count in control

sample">

INFO=<ID:DDP,Number=1,Type=Integer,Description="Read depth in disease

sample">

INFO=<ID:DAC,Number=1,Type=Integer,Description="Allele count in disease

sample">

INFO=<ID:mq,Number=1,Type=Float,Description="Mean mapping quality of

reference reads">

INFO=<ID:mqmis,Number=1,Type=Float,Description="Mean mapping quality of

mismatch containing reads">

INFO=<ID:mq30,Number=1,Type=Float,Description="Ratio of reads whose

mapping quality is less than 30">

INFO=<ID:off,Number=1,Type=Integer,Description="Expected position of

alternative allele in the read (read length/4)">

INFO=<ID:offmis,Number=1,Type=Float,Description="Mean end-position of

alternative allele in the read">

INFO=<ID:prx,Number=1,Type=Float,Description="Ratio of reads that are

closely located nearby indels">

INFO=<ID:prxmis,Number=1,Type=Float,Description="Ratio of alternative

alleles that are closely located nearby indels">

INFO=<id:majoraf,number=1,type=float,description="major allele="" frequency"=""></id:majoraf,number=1,type=float,description="major>

INFO=<ID:bqmis,Number=1,Type=Float,Description="Mean base call quality of

alternative alleles">

INFO=<ID:nm,Number=1,Type=Float,Description="Mean number of mismatches

per read">

INFO=<ID:clip,Number=1,Type=Float,Description="Ratio of soft (hard)

clipped read">

They should be "ID=", not "ID:"

[Virmid]

Dear Paul,

Thank you for the notice!
We will check and correct it soon.

Sangwoo