[Vcftools-help] -LROH output interpretation

[Manuel R. <man...@ho...>]

Hi

I'm running -LROH in a dataset with ~50 samples.
I'm just trying to understand the output. The header gives me the impression that the regions in this file are actually the ones with heterozygosity, so I take it that the remainder are ROHs.

Is that a correct assumption? I haven't found any reference regarding the method used for this specific analysis.

Thanks for any help

Best regards,

Manuel A.R. Escalona, M.Sc.

Laboratório de Biologia Genômica e Molecular
Departamento de Biodiversidade e Ecologia
Faculdade de Biociências - PUCRS
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