[Vcftools-help] -65 as missing genotypes in BCF format

[Genomeo D. <gen...@gm...>]

Hi all,

When using vcftools (0.1.15) to write a BCF file this seems to encode
missing genotypes as -65. BCFtools crashes when handling such files for
example to do filtering etc and this seems to be caused by the values of
-65.

Any way I can force vcftools to keep '.' as missing genotype?

Thanks

-- 
G.