[Vcftools-help] Weird error in --missing-site

[Kazmierczak S. <ste...@gm...>]

I just use the --missing-site on a cohort VCF and it seems your code is
reporting single 0 (reference) and dot (.) in case of 1/. as missing ????
The 0 alone should not be report as missing right ? the reference mean the
sample as a normal allele. Reporting it as missing doesn't make sense and
If reference is missing then dot which is an error/miss call is different,
they can not be count as the same thing