[Vcftools-help] vcftools-help

[Irina C. <ic...@ug...>]

Hi,


I tried to run filtering steps in vcftools to improve the SNPs dataset quality, however error message was as following:


Outputting VCF file...

terminate called after throwing an instance of 'std::bad_alloc'
what():  std::bad_alloc
Aborted (core dumped)


The dataset contains around 700K sites for 239 individuals. It could be a memory problem, and the memory card was previously upgraded, however it is not possible to complete filtering steps.

Could you please assist on this?

Thanks,

Irina