Re: [Vcftools-help] --het?

[Anthony M. <ant...@ei...>]

Hi Andrea,

The output of the --het function is a summary for each individual of the observed number of homozygous sites ( O(hom) ) and the expected number of homozygous sites ( E(hom) ). It also includes the total number of sites that the individual has data for and the inbreeding coefficient F.

Let me know if you have any further questions.

--
Anthony Marcketta
Bioinformatics Analyst
Department of Genetics
Albert Einstein College of Medicine
Price Center 353D
Bronx, New York 10461
________________________________________
From: Gloria-Soria, Andrea [and...@ya...]
Sent: Thursday, March 12, 2015 2:22 PM
To: vcf...@li...
Subject: [Vcftools-help] --het?

Hello,

I used the --het output command to get the heterozygocity present in each individual of my population. However the numbers are not between 0 and 1 as I expected. Can anyone tell me what exactly the O(Hom) and E(Hom) values represent?

Thank you,
Andrea

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