Re: [Vcftools-help] Phasing variants

[Petr D. <pd...@sa...>]

Hi Sahar,

VCFtools can't do phasing. Please check SHAPEIT, although I think it
does not support VCF yet:
http://www.shapeit.fr/

Best,
Petr

On Wed, 2014-04-30 at 13:32 +0300, סהר גלפמן wrote: 
> Hi Petr,
> I would like to phase a single sample vcf file like is done using GATK
> ReadBackedPhasing. I have seen that Samtools phase can do that for BAM
> files.
> Does VCFtools provide a tool that handles this request for vcf files?
> 
> 
> Thank you,
> Sahar
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