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From: Petr D. <pd...@sa...> - 2014-05-06 10:03:35
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Hi Sahar, VCFtools can't do phasing. Please check SHAPEIT, although I think it does not support VCF yet: http://www.shapeit.fr/ Best, Petr On Wed, 2014-04-30 at 13:32 +0300, סהר גלפמן wrote: > Hi Petr, > I would like to phase a single sample vcf file like is done using GATK > ReadBackedPhasing. I have seen that Samtools phase can do that for BAM > files. > Does VCFtools provide a tool that handles this request for vcf files? > > > Thank you, > Sahar > ------------------------------------------------------------------------------ > "Accelerate Dev Cycles with Automated Cross-Browser Testing - For FREE > Instantly run your Selenium tests across 300+ browser/OS combos. Get > unparalleled scalability from the best Selenium testing platform available. > Simple to use. Nothing to install. Get started now for free." > http://p.sf.net/sfu/SauceLabs > _______________________________________________ > Vcftools-help mailing list > Vcf...@li... > https://lists.sourceforge.net/lists/listinfo/vcftools-help -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. |