Re: [Vcftools-help] how can I update vcftools to the most updated version

[Adam A. <ada...@gm...>]

Hello,

Did you type 'make' after updating from the SVN?

Adam

On 19 May 2011, at 05:07, Mao Jianfeng <jia...@gm...> wrote:

> Dear all,
>
> I would like to update vcftools to the most updated version. I run  
> the command listed in the online manu for it. The commands worked  
> for me. But, it looks the vcftools has not been updated. I may have  
> taken any mistakes. Could you please give me any directions on this  
> updating issue?
>
> Thanks in advance.
>
> ### 
> ### 
> ### 
> ### 
> ### 
> #####################################################################
> See here for my INFO:
>
> ####the old version of vcftools
> jmao@upa:/ebio/abt6_projects/backup/solexa_tools/VCFtools/bin$ ls
> compare-vcf  fill-an-ac  merge-vcf  vcf-annotate  vcf-convert  vcf- 
> sort   vcf-subset  vcf-to-tab
> fill-aa      fill-rsIDs  query-vcf  vcf-concat      vcf-isec     vcf- 
> stats  vcftools    vcf-validator
>
> ####svn check
> jmao@upa:/ebio/abt6_projects/backup/solexa_tools/VCFtools/bin$ svn  
> checkout https://vcftools.svn.sourceforge.net/svnroot/vcftools
> U    vcftools/cpp/vcftools.cpp
> U    vcftools/cpp/dgeev.h
> U    vcftools/cpp/vcf_entry.cpp
> U    vcftools/cpp/parameters.cpp
> U    vcftools/cpp/vcf_entry.h
> U    vcftools/cpp/vcf_file_filters.cpp
> U    vcftools/cpp/parameters.h
> U    vcftools/cpp/vcf_entry_setters.cpp
> U    vcftools/cpp/vcf_file.cpp
> U    vcftools/cpp/vcf_file.h
> U    vcftools/cpp/vcf_file_format_convert.cpp
> A    vcftools/cpp/dgeev.cpp
> U    vcftools/cpp/vcf_entry_getters.cpp
> U    vcftools/cpp/Makefile
> U    vcftools/cpp/vcf_file_output.cpp
> U    vcftools/perl/FaSlice.pm
> U    vcftools/perl/fill-ref-md5
> U    vcftools/perl/vcf-concat
> U    vcftools/perl/vcf-annotate
> U    vcftools/perl/Vcf.pm
> U    vcftools/perl/vcf-isec
> U    vcftools/perl/vcf-to-tab
> U    vcftools/perl/vcf-compare
> U    vcftools/perl/Makefile
> U    vcftools/website/src/perl_module.inc
> U    vcftools/website/src/options.inc
> U    vcftools/website/src/links.inc
> U    vcftools/website/src/index.php
> U    vcftools/examples/cmp-test.out
> Checked out revision 530.
>
> #### check the current version, it is still the old version (v0.1.4).
> jmao@upa:/ebio/abt6_projects/backup/solexa_tools/VCFtools/bin$  
> vcftools
>
> VCFtools (v0.1.4)
> © Adam Auton 2009
>
> Process Variant Call Format files
>
> For a list of options, please go to:
>     http://vcftools.sourceforge.net/options.html
>
>
>
> jmao@upa:/ebio/abt6_projects/backup/solexa_tools/VCFtools/bin$ svn  
> update
> Skipped '.'
>
>
> -- 
> Jian-Feng, Mao
>
> --- 
> --- 
> --- 
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