Re: [Vcftools-help] recode polyploid data

[Uitdewilligen, J. <jan...@wu...>]

Can I filter out genotypes with the FORMAT:FT tag using the perl scripts?

Thanks, Jan


From: Adam Auton [mailto:ada...@gm...]
Sent: woensdag 13 april 2011 12:54
To: Uitdewilligen, Jan
Cc: vcf...@li...
Subject: Re: [Vcftools-help] recode polyploid data

I'm afraid that polyploidy isn't currently supported by the C++ module of VCFtools.

Adam
On 13 April 2011 11:51, Uitdewilligen, Jan <jan...@wu...<mailto:jan...@wu...>> wrote:
Hi,

When rewriting a VCF filtered file using --recode, tetraploid GT fields (eg. 1/1/0/0/) get truncated to diploid calls (eg. 1/1). Can you solve this?

Thanks, Jan

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Adam Auton
Post-Doctoral Research Scientist,
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