Re: [Vcftools-help] on svn update

[Adam A. <ada...@gm...>]

If the svn checkout worked, then you are at the latest version.

A

On 31 December 2010 14:08, Mao Jianfeng <jia...@gm...> wrote:

> Dear Adam,
>
> Following your advice, I firstly ran "svn checkout
> https://vcftools.svn.sourceforge.net/svnroot/vcftools vcftools", and
> then "svn update". But, I still got "Skipped '.'  ".
>
> Could you please give me any direction?
>
> I expect your helps.
>
> Jian-Feng
>
>
>
> abt6-mao-mbp:tabix-0.2.3 jianfengmao$ svn checkout
> https://vcftools.svn.sourceforge.net/svnroot/vcftools vcftools
> A    vcftools/file_release
> A    vcftools/file_release/vcftools_0.1.1_source.tar.gz
> A    vcftools/file_release/VCFtools_0.1.3.1.tar.gz
> A    vcftools/file_release/vcftools_0.1.2_source.tar.gz
> A    vcftools/file_release/vcftools_0.1_source.tar.gz
> A    vcftools/file_release/VCFtools_0.1.3.2.tar.gz
> A    vcftools/file_release/VCFtools_0.1.3.tar.gz
> A    vcftools/file_release/vcftools_0.1.1_source_old.tar.gz
> A    vcftools/cpp
> A    vcftools/cpp/vcf_entry.cpp
> A    vcftools/cpp/vcftools.cpp
> A    vcftools/cpp/output_log.cpp
> A    vcftools/cpp/parameters.cpp
> A    vcftools/cpp/vcf_entry.h
> A    vcftools/cpp/vcftools.h
> A    vcftools/cpp/vcf_file_diff.cpp
> A    vcftools/cpp/vcf_file_filters.cpp
> A    vcftools/cpp/output_log.h
> A    vcftools/cpp/parameters.h
> A    vcftools/cpp/vcf_entry_setters.cpp
> A    vcftools/cpp/vcf_file.cpp
> A    vcftools/cpp/vcf_file.h
> A    vcftools/cpp/Makefile
> A    vcftools/cpp/vcf_entry_getters.cpp
> A    vcftools/cpp/vcf_file_output.cpp
> A    vcftools/perl
> A    vcftools/perl/vcf-subset
> A    vcftools/perl/FaSlice.pm
> A    vcftools/perl/query-vcf
> A    vcftools/perl/test.t
> A    vcftools/perl/vcf-concat
> A    vcftools/perl/vcf-annotate
> A    vcftools/perl/ChangeLog
> A    vcftools/perl/Vcf.pm
> A    vcftools/perl/vcf-convert
> A    vcftools/perl/vcf-isec
> A    vcftools/perl/vcf-validator
> A    vcftools/perl/vcf-to-tab
> A    vcftools/perl/compare-vcf
> A    vcftools/perl/vcf-sort
> A    vcftools/perl/fill-an-ac
> A    vcftools/perl/fill-aa
> A    vcftools/perl/vcf-shuffle-cols
> A    vcftools/perl/fill-rsIDs
> A    vcftools/perl/VcfStats.pm
> A    vcftools/perl/vcf-stats
> A    vcftools/perl/merge-vcf
> A    vcftools/perl/Makefile
> A    vcftools/website
> A    vcftools/website/VCF-poster.pdf
> A    vcftools/website/specs.html
> A    vcftools/website/src
> A    vcftools/website/src/index.inc
> A    vcftools/website/src/perl_module.inc
> A    vcftools/website/src/docs.inc
> A    vcftools/website/src/options.inc
> A    vcftools/website/src/specs.inc
> A    vcftools/website/src/license.inc
> A    vcftools/website/src/index.php
> A    vcftools/website/favicon.png
> A    vcftools/website/default.css
> A    vcftools/website/img
> A    vcftools/website/img/bgcontainer.gif
> A    vcftools/website/img/quote.gif
> A    vcftools/website/img/bgcode.gif
> A    vcftools/website/img/li.gif
> A    vcftools/website/img/search.gif
> A    vcftools/website/img/bg.gif
> A    vcftools/website/img/header.gif
> A    vcftools/website/img/bgul.gif
> A    vcftools/website/Makefile
> A    vcftools/website/README
> A    vcftools/website/favicon.ico
> A    vcftools/.project
> A    vcftools/.cproject
> A    vcftools/README.txt
> A    vcftools/Makefile
> A    vcftools/.settings
> A    vcftools/.settings/org.eclipse.ltk.core.refactoring.prefs
> A    vcftools/examples
> A    vcftools/examples/annotate.out
> A    vcftools/examples/subset.vcf
> A    vcftools/examples/shuffle-test.vcf
> A    vcftools/examples/annotate.txt
> A    vcftools/examples/cmp-test-a.vcf
> A    vcftools/examples/subset.indels.out
> A    vcftools/examples/query-test.out
> A    vcftools/examples/cmp-test-a-3.3.vcf
> A    vcftools/examples/cmp-test-b.vcf
> A    vcftools/examples/cmp-test-b-3.3.vcf
> A    vcftools/examples/subset.SNPs.out
> A    vcftools/examples/merge-test.vcf.out
> A    vcftools/examples/isec-n2-test.vcf.out
> A    vcftools/examples/annotate2.out
> A    vcftools/examples/concat-a.vcf
> A    vcftools/examples/invalid-4.0.vcf
> A    vcftools/examples/cmp-test.out
> A    vcftools/examples/concat-b.vcf
> A    vcftools/examples/annotate-test.vcf
> A    vcftools/examples/concat-c.vcf
> A    vcftools/examples/merge-test-a.vcf
> A    vcftools/examples/merge-test-b.vcf
> A    vcftools/examples/valid-4.0.vcf.stats
> A    vcftools/examples/merge-test-c.vcf
> A    vcftools/examples/valid-4.0.vcf
> A    vcftools/examples/concat.out
> A    vcftools/examples/valid-3.3.vcf
>  U   vcftools
> Checked out revision 399.
> abt6-mao-mbp:tabix-0.2.3 jianfengmao$ svn update
> Skipped '.'
>
>
>
>
>
> 2010/12/31 Adam Auton <ada...@gm...>:
> > Did you run the following command before using "svn update"?
> > svn checkout https://vcftools.svn.sourceforge.net/svnroot/vcftoolsvcftools
> > Kind regards,
> > Adam
> >
> > On 31 December 2010 13:28, Mao Jianfeng <jia...@gm...> wrote:
> >>
> >> Dear VCFtools helpers,
> >>
> >> I am new to Unix and genomics.
> >>
> >> When I intent to update VCFtools, I got "Skipped ''."". I want to know
> >> what it is meaning.
> >>
> >> Thank you in Advance.
> >>
> >> Best.
> >>
> >> abt6-mao-mbp:tabix-0.2.3 jianfengmao$ svn update
> >> Skipped '.'
> >>
> >>
> >> --
> >> Jian-Feng, Mao
> >>
> >> the Institute of Botany,
> >> Chinese Academy of Botany,
> >>
> >>
> >>
> ------------------------------------------------------------------------------
> >> Learn how Oracle Real Application Clusters (RAC) One Node allows
> customers
> >> to consolidate database storage, standardize their database environment,
> >> and,
> >> should the need arise, upgrade to a full multi-node Oracle RAC database
> >> without downtime or disruption
> >> http://p.sf.net/sfu/oracle-sfdevnl
> >> _______________________________________________
> >> Vcftools-help mailing list
> >> Vcf...@li...
> >> https://lists.sourceforge.net/lists/listinfo/vcftools-help
> >
> >
> >
>