USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Source Code Commit Log

Commit	Date
[r264] by tmosbruger TomatoFarmer: Graph label changes and pipeline name changes.	2014-10-13 21:28:35	Tree
[r263] by biotelerock Added new app for MergingSam files, a catch for alignments going off the end of chromosomes, updated docs.	2014-10-06 19:53:16	Tree
[r262] by tmosbruger TomatoFarmer: 1) Upgraded pipeline to UGP-v1.0.5 2) Can now specify cluster 3) Can now specify full genome analysis 4) Simplified pipeline selection 5) Improved messaging in emails 6) Relaxed pattern matching for fastq files Bin/Histogram 1) Added support for floating point numbers (needed for full genome) Sam2USeq 1) Coverage statistics (min/max/median/mean) are now calculated on a histogram instead of an arraylist to avoid running out of memory during full-genome analyses.	2014-09-26 19:29:47	Tree
[r261] by biotelerock Lots of clean up of the documentation and addition of cmd line menu descriptions.	2014-09-26 18:50:49	Tree
[r260] by tmosbruger SamTranscriptomeParser: @RG and @PG lines cannot have duplicate ID fields, so STP would crash when merging multiple SAM files. Duplicate ID fields are now suffixed with a number to maintain uniqueness. Modification of the ID field is valid when merging according to SAM spec.	2014-09-18 22:51:28	Tree
[r259] by biotelerock Added lates changes to releaseNotes.txt	2014-09-18 21:39:31	Tree
[r258] by biotelerock Lots of mods to Telescriptor and related classes. Updated DRDS with patch for bad DESeq2 rLog method call.	2014-09-18 21:37:05	Tree
[r257] by tmosbruger 1. STP bug fix	2014-09-12 23:50:52	Tree
[r256] by biotelerock Latest release notes	2014-09-09 17:03:49	Tree
[r255] by biotelerock Adding in changes for Misc and Num.	2014-09-09 17:03:15	Tree

Older >