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Commit [r263]  Maximize  Restore  History

Added new app for MergingSam files, a catch for alignments going off the end of chromosomes, updated docs.

biotelerock 2014-10-06

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Parent: [r262]

Child: [r264]

changed /trunk/Documentation/USeqDocumentation/license.html
changed /trunk/Documentation/USeqDocumentation/releaseNotes.txt
changed /trunk/Source/edu/utah/seq/analysis/DefinedRegionDifferentialSeq.java
added /trunk/Source/edu/utah/seq/parsers/MergeSams.java
changed /trunk/build.properties
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