USeq Source Code

1) Upgraded pipeline to UGP-v1.0.5
2) Can now specify cluster
3) Can now specify full genome analysis
4) Simplified pipeline selection
5) Improved messaging in emails
6) Relaxed pattern matching for fastq files

Bin/Histogram
1) Added support for floating point numbers (needed for full genome)

Sam2USeq
1) Coverage statistics (min/max/median/mean) are now calculated on a histogram instead of an arraylist to avoid running out of memory during full-genome analyses.