Dear all,
I've been getting an error running MultipleReplicaScanSeqs:
java.io.IOException:
DESeq2 R results file doesn't exist. Check temp files in save directory
for error.
When I check the temp file, it is telling me that it cannot find the
function "rlog". I suppose this is some kind of version compatibility
issue? I have both DESeq and DESeq2 packages installed.
My input command was as follows:
java -jar /media/sf_BioLinux/Useq_8.8.9/Apps/MultipleReplicaScanSeqs -t
/media/sf_BioLinux/bam_chr17_35-36K/point_data/SNL -c
/media/sf_BioLinux/bam_chr17_35-36K/point_data/SHAM -s
/media/sf_BioLinux/bam_chr17_35-36K/point_data/SNLvsSHAM_MRS -p 260 -w 500
Any advice would be much appreciated!
Thank you and best wishes,
Franziska
|
