[Useq-users] problem running MultipleReplicaScanSeqs

[Franziska <fra...@kc...>]

Dear  all,

I've been getting an error running MultipleReplicaScanSeqs:

java.io.IOException:
DESeq2 R results file doesn't exist. Check temp files in save directory 
for error.

When I check the temp file, it is telling me that it cannot find the 
function "rlog". I suppose this is some kind of version compatibility 
issue? I have both DESeq and DESeq2 packages installed.

My input command was as follows:

java -jar /media/sf_BioLinux/Useq_8.8.9/Apps/MultipleReplicaScanSeqs -t 
/media/sf_BioLinux/bam_chr17_35-36K/point_data/SNL -c 
/media/sf_BioLinux/bam_chr17_35-36K/point_data/SHAM -s 
/media/sf_BioLinux/bam_chr17_35-36K/point_data/SNLvsSHAM_MRS -p 260 -w 500

Any advice would be much appreciated!

Thank you and best wishes,
Franziska