TreQ / Blog: Recent posts

Hello and welcome to TreQ, the indel-sensitive read mapper using cache-oblivious geometric embedding!

If you want to find out what TreQ is all about, please refer to:

Md Pavel Mahmud, John Wiedenhoeft, and Alexander Schliep: Indel-tolerant
read mapping with trinucleotide frequencies using cache-oblivious kd-trees
Bioinformatics (2012) 28(18): i325-i332 doi:10.1093/bioinformatics/bts380

Today we proudly announce the initial release of TreQ 0.1-beta. It is still very much in its early stages, but should be stable enough for everyday use. There is much to be optimized, though. Be sure we're working on that ;-)... read more