Home

Overview
(Note: this is a protype tool and further details, including source code, will be provided on publication).

TreeScope is a tool that increases the ease of rapidly interacting with sequence data at a highly detailed level. In this protype once the alignment has been loaded interactive trees can be readily created across various user selected section. Trees can be used to identify clusters from which nucleotide and amino acid frequencies can be easily, and immediately, extracted. Future developments will involve including recombination detection strategies using phylogenetic approaches as well as statistically comparing divergence rates across trees from different regions. At the moment an executable jar is available for download as well as some screenshots. Code will be made available on publication.

People involved in this software are John Archer, Pedro Esteves, Joana Abrantes and Immunity and Emerging Disease Group .