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From: Mark M. <mm...@sd...> - 2009-11-09 15:26:47
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Please make this happen in the next week or so, I need to shut down the SDSC parts as soon as possible. Mark -----Original Message----- From: William Piel [mailto:wil...@ya...] Sent: Sunday, November 08, 2009 1:47 AM To: Val Tannen Cc: Rutger Vos; TreeBASE Developers; Hilmar Lapp; Mark Miller Subject: Benchmark Testing on SDSC Hilmar reminded me that the benchmark testing, which was written into the SOM for TreeBASE's hosting at NESCent, needs to be done on the SDSC deployment -- and then compared with the NESCent Deployment. Consequently, we need to run some tests prior to shutting down 8ball/ gigahertz. We (meaning Rutger) need to devise some performance tests (e.g. various non-trivial queries via the API) that can be tested on both SDSC and NESCent so that we have a record of performance differences. This is a requirement of the SOM. thanks, Bill |
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From: William P. <wil...@ya...> - 2009-11-08 09:47:35
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Hilmar reminded me that the benchmark testing, which was written into the SOM for TreeBASE's hosting at NESCent, needs to be done on the SDSC deployment -- and then compared with the NESCent Deployment. Consequently, we need to run some tests prior to shutting down 8ball/ gigahertz. We (meaning Rutger) need to devise some performance tests (e.g. various non-trivial queries via the API) that can be tested on both SDSC and NESCent so that we have a record of performance differences. This is a requirement of the SOM. thanks, Bill |
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From: William P. <wil...@ya...> - 2009-10-15 20:04:28
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We are relying on uBio's web services for providing "taxonomic
intelligence" to TreeBASE. Specifically, we use "service_internal.php"
version 2.0, so as to access the /lexicalGroups/ and /basionymGroup/
elements that are not available on the standard API ("service.php"),
as well as to avoid compressed strings.
The "service_internal.php" services don't seem to be responding, e.g.:
http://www.ubio.org/webservices/service_internal.php?function=namebank_object&namebankID=2481730&version=2.0&keyCode=[keycode]
Could you indicate whether this is just a temporary issue?
thanks very much,
Bill
William H. Piel
Associate Director for Evolutionary Informatics
Peabody 401, Yale University
170 Whitney Ave.
New Haven CT 06511
(203) 436-4957
wil...@ya...
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From: Ryan S. <rsc...@ne...> - 2009-10-14 19:28:25
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I think the community realized that all implementations will need essentially the same code for harvesting, while the service portion would be highly dependent on the exact use of the data. So most conversations revolve around the term "harvester", and the issues that are common to people who harvest data. In fact, we haven't yet decided exactly what TreeBASE will do with data that is harvested from Dryad, we only know that the harvesting step must come first. The term "OAI-PMH data provider" is still widely used, though it is usually shortened to the more ambiguous form "OAI provider". -- Ryan On Oct 14, 2009, at 3:20 PM, youjun guo wrote: > Thanks to make it clear, Ryan. > > "Service provider" and "harvester" are not inter-changeable. > Harvester doesn't have to "provider useful service" except > harvesting. > > I believe the community may think "providing service" is out of the > scope of meta date harvesting. > > Do the community also reject the term "data provider" ? > > Youjun > > On Wed, Oct 14, 2009 at 1:12 PM, Ryan Scherle <rsc...@ne...> > wrote: > The OAI-PMH standard uses the terminology "service provider" to mean > "entity who harvests data and provides a useful service". The > digital library community essentially rejected this terminology in > favor of "harvester", but the standards documents have never been > changed. To reduce confusion, we should use "harvester". > > -- Ryan > > > On Oct 13, 2009, at 5:38 PM, Hilmar Lapp wrote: > > > On Oct 13, 2009, at 9:14 AM, youjun guo wrote: > > Thanks hilmar, It will be renamed to oai-pmh_data_provider, tell > from oai-pmh service provider. > > I'm a fan of descriptive names, but what is the difference again > between the oai-pmh service provider and the oai-pmh data provider? > > I thought we only have an oai-pmh provider and an oai-pmh harvester? > > -hilmar > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- hlapp at duke dot edu : > =========================================================== > > > > > > ------------------------------------------------------------------------------ > Come build with us! The BlackBerry(R) Developer Conference in SF, CA > is the only developer event you need to attend this year. Jumpstart > your > developing skills, take BlackBerry mobile applications to market and > stay > ahead of the curve. Join us from November 9 - 12, 2009. Register now! > http://p.sf.net/sfu/devconference > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > |
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From: youjun g. <you...@ya...> - 2009-10-14 19:20:22
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Thanks to make it clear, Ryan. "Service provider" and "harvester" are not inter-changeable. Harvester doesn't have to "provider useful service" except harvesting. I believe the community may think "providing service" is out of the scope of meta date harvesting. Do the community also reject the term "data provider" ? Youjun On Wed, Oct 14, 2009 at 1:12 PM, Ryan Scherle <rsc...@ne...> wrote: > The OAI-PMH standard uses the terminology "service provider" to mean > "entity who harvests data and provides a useful service". The digital > library community essentially rejected this terminology in favor of > "harvester", but the standards documents have never been changed. To reduce > confusion, we should use "harvester". > > -- Ryan > > > On Oct 13, 2009, at 5:38 PM, Hilmar Lapp wrote: > > >> On Oct 13, 2009, at 9:14 AM, youjun guo wrote: >> >> Thanks hilmar, It will be renamed to oai-pmh_data_provider, tell >>> from oai-pmh service provider. >>> >> >> I'm a fan of descriptive names, but what is the difference again >> between the oai-pmh service provider and the oai-pmh data provider? >> >> I thought we only have an oai-pmh provider and an oai-pmh harvester? >> >> -hilmar >> >> -- >> =========================================================== >> : Hilmar Lapp -:- Durham, NC -:- hlapp at duke dot edu : >> =========================================================== >> >> >> >> >> >> >> ------------------------------------------------------------------------------ >> Come build with us! The BlackBerry(R) Developer Conference in SF, CA >> is the only developer event you need to attend this year. Jumpstart your >> developing skills, take BlackBerry mobile applications to market and stay >> ahead of the curve. Join us from November 9 - 12, 2009. Register now! >> http://p.sf.net/sfu/devconference >> _______________________________________________ >> Treebase-devel mailing list >> Tre...@li... >> https://lists.sourceforge.net/lists/listinfo/treebase-devel >> > > |
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From: Ryan S. <rsc...@ne...> - 2009-10-14 17:13:13
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The OAI-PMH standard uses the terminology "service provider" to mean "entity who harvests data and provides a useful service". The digital library community essentially rejected this terminology in favor of "harvester", but the standards documents have never been changed. To reduce confusion, we should use "harvester". -- Ryan On Oct 13, 2009, at 5:38 PM, Hilmar Lapp wrote: > > On Oct 13, 2009, at 9:14 AM, youjun guo wrote: > >> Thanks hilmar, It will be renamed to oai-pmh_data_provider, tell >> from oai-pmh service provider. > > I'm a fan of descriptive names, but what is the difference again > between the oai-pmh service provider and the oai-pmh data provider? > > I thought we only have an oai-pmh provider and an oai-pmh harvester? > > -hilmar > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- hlapp at duke dot edu : > =========================================================== > > > > > > ------------------------------------------------------------------------------ > Come build with us! The BlackBerry(R) Developer Conference in SF, CA > is the only developer event you need to attend this year. Jumpstart > your > developing skills, take BlackBerry mobile applications to market and > stay > ahead of the curve. Join us from November 9 - 12, 2009. Register now! > http://p.sf.net/sfu/devconference > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel |
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From: youjun g. <you...@ya...> - 2009-10-13 22:44:52
|
I think this document of the OAF(open archives forum) explain the terms more clearly: http://www.oaforum.org/tutorial/english/page3.htm Youjun On Tue, Oct 13, 2009 at 5:38 PM, Hilmar Lapp <hl...@du...> wrote: > > On Oct 13, 2009, at 9:14 AM, youjun guo wrote: > > Thanks hilmar, It will be renamed to oai-pmh_data_provider, tell from >> oai-pmh service provider. >> > > I'm a fan of descriptive names, but what is the difference again between > the oai-pmh service provider and the oai-pmh data provider? > > I thought we only have an oai-pmh provider and an oai-pmh harvester? > > -hilmar > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- hlapp at duke dot edu : > =========================================================== > > > > > |
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From: Hilmar L. <hl...@du...> - 2009-10-13 21:39:46
|
On Oct 13, 2009, at 9:14 AM, youjun guo wrote: > Thanks hilmar, It will be renamed to oai-pmh_data_provider, tell > from oai-pmh service provider. I'm a fan of descriptive names, but what is the difference again between the oai-pmh service provider and the oai-pmh data provider? I thought we only have an oai-pmh provider and an oai-pmh harvester? -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at duke dot edu : =========================================================== |
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From: youjun g. <you...@ya...> - 2009-10-13 13:14:38
|
Thanks hilmar, It will be renamed to oai-pmh_data_provider, tell from oai-pmh service provider. Youjun On Mon, Oct 12, 2009 at 10:35 PM, Hilmar Lapp <hl...@gm...> wrote: > Assuming that the data_provider directory is only going to hold the > OAI-PMH provider code, I suggest that we rename that to what it is: > oai-pmh-provider > > Otherwise (if there are going to be multiple data_provider_apis), put > an appropriately named subdirectory, and rename the directory > accordingly (such as data_provider_apis) too. > > -hilmar > > On Oct 12, 2009, at 7:12 PM, yo...@us... wrote: > > > Revision: 192 > > http://treebase.svn.sourceforge.net/treebase/? > > rev=192&view=rev > > Author: youjun > > Date: 2009-10-12 23:12:11 +0000 (Mon, 12 Oct 2009) > > > > Log Message: > > ----------- > > oai_pmh data_provider > > > > Added Paths: > > ----------- > > trunk/data_provider/ > > trunk/data_provider/.classpath > > trunk/data_provider/.project > > trunk/data_provider/.settings/ > > trunk/data_provider/.settings/org.eclipse.jdt.core.prefs > > trunk/data_provider/.settings/org.maven.ide.eclipse.prefs > > trunk/data_provider/data_provider_core/ > > trunk/data_provider/data_provider_core/.classpath > > trunk/data_provider/data_provider_core/.project > > trunk/data_provider/data_provider_core/.settings/ > > trunk/data_provider/data_provider_core/.settings/ > > org.eclipse.jdt.core.prefs > > trunk/data_provider/data_provider_core/.settings/ > > org.eclipse.wst.common.component > > trunk/data_provider/data_provider_core/.settings/ > > org.eclipse.wst.common.project.facet.core.xml > > trunk/data_provider/data_provider_core/.settings/ > > org.maven.ide.eclipse.prefs > > trunk/data_provider/data_provider_core/pom.xml > > trunk/data_provider/data_provider_core/src/ > > trunk/data_provider/data_provider_core/src/main/ > > trunk/data_provider/data_provider_core/src/main/java/ > > trunk/data_provider/data_provider_core/src/main/java/META-INF/ > > trunk/data_provider/data_provider_core/src/main/java/META-INF/ > > MANIFEST.MF > > trunk/data_provider/data_provider_core/src/main/java/org/ > > trunk/data_provider/data_provider_core/src/main/java/org/treebase/ > > trunk/data_provider/data_provider_core/src/main/java/org/treebase/ > > oai/ > > trunk/data_provider/data_provider_core/src/main/java/org/treebase/ > > oai/App.java > > trunk/data_provider/data_provider_core/src/main/resources/ > > trunk/data_provider/data_provider_core/src/test/ > > trunk/data_provider/data_provider_core/src/test/java/ > > trunk/data_provider/data_provider_core/src/test/java/org/ > > trunk/data_provider/data_provider_core/src/test/java/org/treebase/ > > trunk/data_provider/data_provider_core/src/test/java/org/treebase/ > > oai/ > > trunk/data_provider/data_provider_core/src/test/java/org/treebase/ > > oai/AppTest.java > > trunk/data_provider/data_provider_core/src/test/resources/ > > trunk/data_provider/data_provider_core/target/ > > trunk/data_provider/data_provider_core/target/classes/ > > trunk/data_provider/data_provider_core/target/classes/META-INF/ > > trunk/data_provider/data_provider_core/target/classes/META-INF/ > > MANIFEST.MF > > trunk/data_provider/data_provider_core/target/classes/org/ > > trunk/data_provider/data_provider_core/target/classes/org/treebase/ > > trunk/data_provider/data_provider_core/target/classes/org/ > > treebase/oai/ > > trunk/data_provider/data_provider_core/target/classes/org/ > > treebase/oai/App.class > > trunk/data_provider/data_provider_core/target/test-classes/ > > trunk/data_provider/data_provider_core/target/test-classes/org/ > > trunk/data_provider/data_provider_core/target/test-classes/org/ > > treebase/ > > trunk/data_provider/data_provider_core/target/test-classes/org/ > > treebase/oai/ > > trunk/data_provider/data_provider_core/target/test-classes/org/ > > treebase/oai/AppTest.class > > trunk/data_provider/data_provider_web/ > > trunk/data_provider/data_provider_web/.classpath > > trunk/data_provider/data_provider_web/.project > > trunk/data_provider/data_provider_web/.settings/ > > trunk/data_provider/data_provider_web/.settings/.jsdtscope > > trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.jdt.core.prefs > > trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.common.component > > trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.common.project.facet.core.xml > > trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.jsdt.ui.superType.container > > trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.jsdt.ui.superType.name > > trunk/data_provider/data_provider_web/.settings/ > > org.maven.ide.eclipse.prefs > > trunk/data_provider/data_provider_web/pom.xml > > trunk/data_provider/data_provider_web/src/ > > trunk/data_provider/data_provider_web/src/main/ > > trunk/data_provider/data_provider_web/src/main/java/ > > trunk/data_provider/data_provider_web/src/main/resources/ > > trunk/data_provider/data_provider_web/src/main/webapp/ > > trunk/data_provider/data_provider_web/src/main/webapp/META-INF/ > > trunk/data_provider/data_provider_web/src/main/webapp/META-INF/ > > MANIFEST.MF > > trunk/data_provider/data_provider_web/src/main/webapp/WEB-INF/ > > trunk/data_provider/data_provider_web/src/main/webapp/WEB-INF/lib/ > > trunk/data_provider/data_provider_web/src/main/webapp/WEB-INF/ > > web.xml > > trunk/data_provider/data_provider_web/src/main/webapp/index.jsp > > trunk/data_provider/data_provider_web/src/test/ > > trunk/data_provider/data_provider_web/src/test/java/ > > trunk/data_provider/data_provider_web/src/test/resources/ > > trunk/data_provider/data_provider_web/target/ > > trunk/data_provider/data_provider_web/target/classes/ > > trunk/data_provider/data_provider_web/target/test-classes/ > > trunk/data_provider/pom.xml > > trunk/data_provider/target/ > > trunk/data_provider/target/classes/ > > trunk/data_provider/target/classes/org/ > > trunk/data_provider/target/classes/org/treebase/ > > trunk/data_provider/target/classes/org/treebase/oai/ > > trunk/data_provider/target/classes/org/treebase/oai/data_provider/ > > trunk/data_provider/target/classes/org/treebase/oai/data_provider/ > > App.class > > trunk/data_provider/target/test-classes/ > > trunk/data_provider/target/test-classes/org/ > > trunk/data_provider/target/test-classes/org/treebase/ > > trunk/data_provider/target/test-classes/org/treebase/oai/ > > trunk/data_provider/target/test-classes/org/treebase/oai/ > > data_provider/ > > trunk/data_provider/target/test-classes/org/treebase/oai/ > > data_provider/AppTest.class > > > > Added: trunk/data_provider/.classpath > > =================================================================== > > --- trunk/data_provider/.classpath (rev 0) > > +++ trunk/data_provider/.classpath 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,6 @@ > > +<?xml version="1.0" encoding="UTF-8"?> > > +<classpath> > > + <classpathentry kind="con" > > path="org.eclipse.jdt.launching.JRE_CONTAINER"/> > > + <classpathentry kind="con" > > path="org.maven.ide.eclipse.MAVEN2_CLASSPATH_CONTAINER"/> > > + <classpathentry kind="output" path="target/classes"/> > > +</classpath> > > > > Added: trunk/data_provider/.project > > =================================================================== > > --- trunk/data_provider/.project (rev 0) > > +++ trunk/data_provider/.project 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,23 @@ > > +<?xml version="1.0" encoding="UTF-8"?> > > +<projectDescription> > > + <name>data_provider</name> > > + <comment></comment> > > + <projects> > > + </projects> > > + <buildSpec> > > + <buildCommand> > > + <name>org.eclipse.jdt.core.javabuilder</name> > > + <arguments> > > + </arguments> > > + </buildCommand> > > + <buildCommand> > > + <name>org.maven.ide.eclipse.maven2Builder</name> > > + <arguments> > > + </arguments> > > + </buildCommand> > > + </buildSpec> > > + <natures> > > + <nature>org.eclipse.jdt.core.javanature</nature> > > + <nature>org.maven.ide.eclipse.maven2Nature</nature> > > + </natures> > > +</projectDescription> > > > > Added: trunk/data_provider/.settings/org.eclipse.jdt.core.prefs > > =================================================================== > > --- trunk/data_provider/.settings/ > > org.eclipse.jdt.core.prefs (rev 0) > > +++ trunk/data_provider/.settings/org.eclipse.jdt.core.prefs > > 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,5 @@ > > +#Mon Oct 12 12:48:37 EDT 2009 > > +eclipse.preferences.version=1 > > +org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.2 > > +org.eclipse.jdt.core.compiler.compliance=1.4 > > +org.eclipse.jdt.core.compiler.source=1.3 > > > > Added: trunk/data_provider/.settings/org.maven.ide.eclipse.prefs > > =================================================================== > > --- trunk/data_provider/.settings/ > > org.maven.ide.eclipse.prefs (rev 0) > > +++ trunk/data_provider/.settings/org.maven.ide.eclipse.prefs > > 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,9 @@ > > +#Mon Oct 12 12:48:36 EDT 2009 > > +activeProfiles= > > +eclipse.preferences.version=1 > > +fullBuildGoals=process-test-resources > > +includeModules=false > > +resolveWorkspaceProjects=true > > +resourceFilterGoals=process-resources resources\:testResources > > +skipCompilerPlugin=true > > +version=1 > > > > Added: trunk/data_provider/data_provider_core/.classpath > > =================================================================== > > --- trunk/data_provider/ > > data_provider_core/.classpath (rev 0) > > +++ trunk/data_provider/data_provider_core/.classpath 2009-10-12 > > 23:12:11 UTC (rev 192) > > @@ -0,0 +1,11 @@ > > +<?xml version="1.0" encoding="UTF-8"?> > > +<classpath> > > + <classpathentry kind="src" output="target/classes" path="src/main/ > > java"/> > > + <classpathentry kind="src" output="target/test-classes" path="src/ > > test/java"/> > > + <classpathentry kind="src" path="src/main/resources"/> > > + <classpathentry kind="src" path="src/test/resources"/> > > + <classpathentry kind="con" > > path="org.eclipse.jdt.launching.JRE_CONTAINER"/> > > + <classpathentry kind="con" > > path="org.maven.ide.eclipse.MAVEN2_CLASSPATH_CONTAINER"/> > > + <classpathentry kind="con" > > path="org.eclipse.jst.j2ee.internal.module.container"/> > > + <classpathentry kind="output" path="target/classes"/> > > +</classpath> > > > > Added: trunk/data_provider/data_provider_core/.project > > =================================================================== > > --- trunk/data_provider/ > > data_provider_core/.project (rev 0) > > +++ trunk/data_provider/data_provider_core/.project 2009-10-12 > > 23:12:11 UTC (rev 192) > > @@ -0,0 +1,36 @@ > > +<?xml version="1.0" encoding="UTF-8"?> > > +<projectDescription> > > + <name>data_provider_core</name> > > + <comment></comment> > > + <projects> > > + </projects> > > + <buildSpec> > > + <buildCommand> > > + > <name>org.eclipse.wst.common.project.facet.core.builder</name> > > + <arguments> > > + </arguments> > > + </buildCommand> > > + <buildCommand> > > + <name>org.eclipse.jdt.core.javabuilder</name> > > + <arguments> > > + </arguments> > > + </buildCommand> > > + <buildCommand> > > + <name>org.maven.ide.eclipse.maven2Builder</name> > > + <arguments> > > + </arguments> > > + </buildCommand> > > + <buildCommand> > > + > <name>org.eclipse.wst.validation.validationbuilder</name> > > + <arguments> > > + </arguments> > > + </buildCommand> > > + </buildSpec> > > + <natures> > > + <nature>org.eclipse.jem.workbench.JavaEMFNature</nature> > > + > <nature>org.eclipse.wst.common.modulecore.ModuleCoreNature</nature> > > + <nature>org.eclipse.jdt.core.javanature</nature> > > + <nature>org.maven.ide.eclipse.maven2Nature</nature> > > + > <nature>org.eclipse.wst.common.project.facet.core.nature</nature> > > + </natures> > > +</projectDescription> > > > > Added: trunk/data_provider/data_provider_core/.settings/ > > org.eclipse.jdt.core.prefs > > =================================================================== > > --- trunk/data_provider/data_provider_core/.settings/ > > org.eclipse.jdt.core.prefs (rev 0) > > +++ trunk/data_provider/data_provider_core/.settings/ > > org.eclipse.jdt.core.prefs 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,7 @@ > > +#Mon Oct 12 16:25:16 EDT 2009 > > +eclipse.preferences.version=1 > > +org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.2 > > +org.eclipse.jdt.core.compiler.compliance=1.4 > > +org.eclipse.jdt.core.compiler.problem.assertIdentifier=warning > > +org.eclipse.jdt.core.compiler.problem.enumIdentifier=warning > > +org.eclipse.jdt.core.compiler.source=1.3 > > > > Added: trunk/data_provider/data_provider_core/.settings/ > > org.eclipse.wst.common.component > > =================================================================== > > --- trunk/data_provider/data_provider_core/.settings/ > > org.eclipse.wst.common.component (rev 0) > > +++ trunk/data_provider/data_provider_core/.settings/ > > org.eclipse.wst.common.component 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,9 @@ > > +<?xml version="1.0" encoding="UTF-8"?> > > +<project-modules id="moduleCoreId" project-version="1.5.0"> > > + <wb-module deploy-name="data_provider_core"> > > + <wb-resource deploy-path="/" source-path="/src/main/java"/> > > + <wb-resource deploy-path="/" source-path="/src/main/ > > resource"/> > > + <wb-resource deploy-path="/" source-path="/src/test/ > > resources"/> > > + <wb-resource deploy-path="/" source-path="/src/main/ > > resources"/> > > + </wb-module> > > +</project-modules> > > > > Added: trunk/data_provider/data_provider_core/.settings/ > > org.eclipse.wst.common.project.facet.core.xml > > =================================================================== > > --- trunk/data_provider/data_provider_core/.settings/ > > org.eclipse.wst.common.project.facet.core.xml > > (rev 0) > > +++ trunk/data_provider/data_provider_core/.settings/ > > org.eclipse.wst.common.project.facet.core.xml 2009-10-12 23:12:11 > > UTC (rev 192) > > @@ -0,0 +1,5 @@ > > +<?xml version="1.0" encoding="UTF-8"?> > > +<faceted-project> > > + <installed facet="jst.java" version="1.4"/> > > + <installed facet="jst.utility" version="1.0"/> > > +</faceted-project> > > > > Added: trunk/data_provider/data_provider_core/.settings/ > > org.maven.ide.eclipse.prefs > > =================================================================== > > --- trunk/data_provider/data_provider_core/.settings/ > > org.maven.ide.eclipse.prefs (rev 0) > > +++ trunk/data_provider/data_provider_core/.settings/ > > org.maven.ide.eclipse.prefs 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,9 @@ > > +#Mon Oct 12 12:55:06 EDT 2009 > > +activeProfiles= > > +eclipse.preferences.version=1 > > +fullBuildGoals=process-test-resources > > +includeModules=false > > +resolveWorkspaceProjects=true > > +resourceFilterGoals=process-resources resources\:testResources > > +skipCompilerPlugin=true > > +version=1 > > > > Added: trunk/data_provider/data_provider_core/pom.xml > > =================================================================== > > --- trunk/data_provider/data_provider_core/ > > pom.xml (rev 0) > > +++ trunk/data_provider/data_provider_core/pom.xml 2009-10-12 > > 23:12:11 UTC (rev 192) > > @@ -0,0 +1,164 @@ > > +<?xml version="1.0" encoding="UTF-8"?><project> > > + <parent> > > + <artifactId>data_provider</artifactId> > > + <groupId>org.treebase.oai</groupId> > > + <version>0.0.1-SNAPSHOT</version> > > + </parent> > > + <modelVersion>4.0.0</modelVersion> > > + <groupId>org.treebase.oai</groupId> > > + <artifactId>data_provider_core</artifactId> > > + <packaging>jar</packaging> > > + <name>data_provider_core</name> > > + <version>0.0.1-SNAPSHOT</version> > > + <url>http://maven.apache.org</url> > > + > > + <build> > > + <defaultGoal>install</defaultGoal> > > + </build> > > + > > + <dependencies> > > + > > + <dependency> > > + <groupId>postgresql</groupId> > > + <artifactId>postgresql</artifactId> > > + <version>8.3-603.jdbc3</version> > > + </dependency> > > + > > + > > + <dependency> > > + <groupId>org.acegisecurity</groupId> > > + <artifactId>acegi-security</artifactId> > > + <version>1.0.1</version> > > + <exclusions> > > + <!-- Maven thinks 2.0 is newer than 2.1--> > > + <exclusion> > > + <groupId>commons-lang</groupId> > > + <artifactId>commons-lang</artifactId> > > + </exclusion> > > + <!-- exclude older versions of Spring --> > > + <exclusion> > > + <groupId>org.springframework</groupId> > > + <artifactId>spring-remoting</artifactId> > > + </exclusion> > > + <exclusion> > > + <groupId>org.springframework</groupId> > > + <artifactId>spring-jdbc</artifactId> > > + </exclusion> > > + <exclusion> > > + <groupId>org.springframework</groupId> > > + <artifactId>spring-support</artifactId> > > + </exclusion> > > + </exclusions> > > + </dependency> > > + > > + <dependency> > > + <groupId>c3p0</groupId> > > + <artifactId>c3p0</artifactId> > > + <version>0.9.1.2</version> > > + </dependency> > > + > > + > > + <dependency> > > + <groupId>org.hibernate</groupId> > > + <artifactId>hibernate-annotations</artifactId> > > + <version>3.3.1.GA</version> > > + <exclusions> > > + <exclusion> > > + <groupId>asm</groupId> > > + <artifactId>asm</artifactId> > > + </exclusion> > > + <exclusion> > > + <groupId>asm</groupId> > > + <artifactId>asm-attrs</artifactId> > > + </exclusion> > > + <exclusion> > > + <groupId>cglib</groupId> > > + <artifactId>cglib</artifactId> > > + </exclusion> > > + </exclusions> > > + </dependency> > > + > > + <dependency> > > + <groupId>cglib</groupId> > > + <artifactId>cglib-nodep</artifactId> > > + <version>2.1_3</version> > > + </dependency> > > + > > + <dependency> > > + <groupId>commons-lang</groupId> > > + <artifactId>commons-lang</artifactId> > > + <version>2.1</version> > > + </dependency> > > + > > + <dependency> > > + <groupId>ibm</groupId> > > + <artifactId>db2jcc</artifactId> > > + <version>2.6.80</version> > > + </dependency> > > + > > + > > + > > + <dependency> > > + <groupId>jdom</groupId> > > + <artifactId>jdom</artifactId> > > + <version>1.1</version> > > + </dependency> > > + > > + <dependency> > > + <groupId>org.apache.cxf</groupId> > > + <artifactId>cxf-rt-frontend-jaxws</artifactId> > > + <version>2.1.1</version> > > + <exclusions> > > + <exclusion> > > + <groupId>asm</groupId> > > + <artifactId>asm</artifactId> > > + </exclusion> > > + > > + <exclusion> > > + <groupId>org.slf4j</groupId> > > + <artifactId>slf4j-jdk14</artifactId> > > + </exclusion> > > + </exclusions> > > + </dependency> > > + > > + <dependency> > > + <groupId>org.apache.cxf</groupId> > > + <artifactId>cxf-rt-transports-http</artifactId> > > + <version>2.1.1</version> > > + <exclusions> > > + <exclusion> > > + <groupId>asm</groupId> > > + <artifactId>asm</artifactId> > > + </exclusion> > > + > > + <exclusion> > > + <groupId>org.slf4j</groupId> > > + <artifactId>slf4j-jdk14</artifactId> > > + </exclusion> > > + </exclusions> > > + </dependency> > > + > > + <dependency> > > + <groupId>org.apache.cxf</groupId> > > + <artifactId>cxf-rt-transports-http-jetty</artifactId> > > + <version>2.1.1</version> > > + <exclusions> > > + <exclusion> > > + <groupId>asm</groupId> > > + <artifactId>asm</artifactId> > > + </exclusion> > > + <exclusion> > > + <groupId>org.slf4j</groupId> > > + <artifactId>slf4j-jdk14</artifactId> > > + </exclusion> > > + </exclusions> > > + </dependency> > > + <dependency> > > + <groupId>dom4j</groupId> > > + <artifactId>dom4j</artifactId> > > + <version>1.6.1</version> > > + </dependency> > > + > > + </dependencies> > > + > > +</project> > > \ No newline at end of file > > > > Added: trunk/data_provider/data_provider_core/src/main/java/META-INF/ > > MANIFEST.MF > > =================================================================== > > --- trunk/data_provider/data_provider_core/src/main/java/META-INF/ > > MANIFEST.MF (rev 0) > > +++ trunk/data_provider/data_provider_core/src/main/java/META-INF/ > > MANIFEST.MF 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,3 @@ > > +Manifest-Version: 1.0 > > +Class-Path: > > + > > > > Added: trunk/data_provider/data_provider_core/src/main/java/org/ > > treebase/oai/App.java > > =================================================================== > > --- trunk/data_provider/data_provider_core/src/main/java/org/ > > treebase/oai/App.java (rev 0) > > +++ trunk/data_provider/data_provider_core/src/main/java/org/ > > treebase/oai/App.java 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,13 @@ > > +package org.treebase.oai; > > + > > +/** > > + * Hello world! > > + * > > + */ > > +public class App > > +{ > > + public static void main( String[] args ) > > + { > > + System.out.println( "Hello World!" ); > > + } > > +} > > > > Added: trunk/data_provider/data_provider_core/src/test/java/org/ > > treebase/oai/AppTest.java > > =================================================================== > > --- trunk/data_provider/data_provider_core/src/test/java/org/ > > treebase/oai/AppTest.java (rev 0) > > +++ trunk/data_provider/data_provider_core/src/test/java/org/ > > treebase/oai/AppTest.java 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,38 @@ > > +package org.treebase.oai; > > + > > +import junit.framework.Test; > > +import junit.framework.TestCase; > > +import junit.framework.TestSuite; > > + > > +/** > > + * Unit test for simple App. > > + */ > > +public class AppTest > > + extends TestCase > > +{ > > + /** > > + * Create the test case > > + * > > + * @param testName name of the test case > > + */ > > + public AppTest( String testName ) > > + { > > + super( testName ); > > + } > > + > > + /** > > + * @return the suite of tests being tested > > + */ > > + public static Test suite() > > + { > > + return new TestSuite( AppTest.class ); > > + } > > + > > + /** > > + * Rigourous Test :-) > > + */ > > + public void testApp() > > + { > > + assertTrue( true ); > > + } > > +} > > > > Added: trunk/data_provider/data_provider_core/target/classes/META- > > INF/MANIFEST.MF > > =================================================================== > > --- trunk/data_provider/data_provider_core/target/classes/META-INF/ > > MANIFEST.MF (rev 0) > > +++ trunk/data_provider/data_provider_core/target/classes/META-INF/ > > MANIFEST.MF 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,3 @@ > > +Manifest-Version: 1.0 > > +Class-Path: > > + > > > > Added: trunk/data_provider/data_provider_core/target/classes/org/ > > treebase/oai/App.class > > =================================================================== > > (Binary files differ) > > > > > > Property changes on: trunk/data_provider/data_provider_core/target/ > > classes/org/treebase/oai/App.class > > ___________________________________________________________________ > > Added: svn:mime-type > > + application/octet-stream > > > > Added: trunk/data_provider/data_provider_core/target/test-classes/ > > org/treebase/oai/AppTest.class > > =================================================================== > > (Binary files differ) > > > > > > Property changes on: trunk/data_provider/data_provider_core/target/ > > test-classes/org/treebase/oai/AppTest.class > > ___________________________________________________________________ > > Added: svn:mime-type > > + application/octet-stream > > > > Added: trunk/data_provider/data_provider_web/.classpath > > =================================================================== > > --- trunk/data_provider/ > > data_provider_web/.classpath (rev 0) > > +++ trunk/data_provider/data_provider_web/.classpath 2009-10-12 > > 23:12:11 UTC (rev 192) > > @@ -0,0 +1,16 @@ > > +<?xml version="1.0" encoding="UTF-8"?> > > +<classpath> > > + <classpathentry excluding="**" kind="src" output="target/classes" > > path="src/main/resources"/> > > + <classpathentry kind="src" path="src/main/java"/> > > + <classpathentry kind="src" path="src/test/java"/> > > + <classpathentry kind="src" path="src/test/resources"/> > > + <classpathentry kind="con" > > path="org.eclipse.jdt.launching.JRE_CONTAINER"/> > > + <classpathentry kind="con" > > path="org.maven.ide.eclipse.MAVEN2_CLASSPATH_CONTAINER"> > > + <attributes> > > + <attribute > name="org.eclipse.jst.component.dependency" value="/ > > WEB-INF/lib"/> > > + </attributes> > > + </classpathentry> > > + <classpathentry kind="con" > > path="org.eclipse.jst.j2ee.internal.web.container"/> > > + <classpathentry kind="con" > > path="org.eclipse.jst.j2ee.internal.module.container"/> > > + <classpathentry kind="output" path="target/classes"/> > > +</classpath> > > > > Added: trunk/data_provider/data_provider_web/.project > > =================================================================== > > --- trunk/data_provider/ > > data_provider_web/.project (rev 0) > > +++ trunk/data_provider/data_provider_web/.project 2009-10-12 > > 23:12:11 UTC (rev 192) > > @@ -0,0 +1,42 @@ > > +<?xml version="1.0" encoding="UTF-8"?> > > +<projectDescription> > > + <name>data_provider_web</name> > > + <comment></comment> > > + <projects> > > + </projects> > > + <buildSpec> > > + <buildCommand> > > + > <name>org.eclipse.wst.jsdt.core.javascriptValidator</name> > > + <arguments> > > + </arguments> > > + </buildCommand> > > + <buildCommand> > > + > <name>org.eclipse.wst.common.project.facet.core.builder</name> > > + <arguments> > > + </arguments> > > + </buildCommand> > > + <buildCommand> > > + <name>org.eclipse.jdt.core.javabuilder</name> > > + <arguments> > > + </arguments> > > + </buildCommand> > > + <buildCommand> > > + > <name>org.eclipse.wst.validation.validationbuilder</name> > > + <arguments> > > + </arguments> > > + </buildCommand> > > + <buildCommand> > > + <name>org.maven.ide.eclipse.maven2Builder</name> > > + <arguments> > > + </arguments> > > + </buildCommand> > > + </buildSpec> > > + <natures> > > + <nature>org.eclipse.jem.workbench.JavaEMFNature</nature> > > + > <nature>org.eclipse.wst.common.modulecore.ModuleCoreNature</nature> > > + <nature>org.eclipse.jdt.core.javanature</nature> > > + <nature>org.maven.ide.eclipse.maven2Nature</nature> > > + > <nature>org.eclipse.wst.common.project.facet.core.nature</nature> > > + <nature>org.eclipse.wst.jsdt.core.jsNature</nature> > > + </natures> > > +</projectDescription> > > > > Added: trunk/data_provider/data_provider_web/.settings/.jsdtscope > > =================================================================== > > --- trunk/data_provider/ > > data_provider_web/.settings/.jsdtscope > (rev 0) > > +++ trunk/data_provider/data_provider_web/.settings/.jsdtscope > > 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,11 @@ > > +<?xml version="1.0" encoding="UTF-8"?> > > +<classpath> > > + <classpathentry kind="con" > > path="org.eclipse.wst.jsdt.launching.JRE_CONTAINER"/> > > + <classpathentry kind="con" > > path="org.eclipse.wst.jsdt.launching.WebProject"> > > + <attributes> > > + <attribute name="hide" value="true"/> > > + </attributes> > > + </classpathentry> > > + <classpathentry kind="con" > > path="org.eclipse.wst.jsdt.launching.baseBrowserLibrary"/> > > + <classpathentry kind="output" path=""/> > > +</classpath> > > > > Added: trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.jdt.core.prefs > > =================================================================== > > --- trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.jdt.core.prefs (rev 0) > > +++ trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.jdt.core.prefs 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,7 @@ > > +#Mon Oct 12 12:59:49 EDT 2009 > > +eclipse.preferences.version=1 > > +org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.2 > > +org.eclipse.jdt.core.compiler.compliance=1.4 > > +org.eclipse.jdt.core.compiler.problem.assertIdentifier=warning > > +org.eclipse.jdt.core.compiler.problem.enumIdentifier=warning > > +org.eclipse.jdt.core.compiler.source=1.3 > > > > Added: trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.common.component > > =================================================================== > > --- trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.common.component (rev 0) > > +++ trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.common.component 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,15 @@ > > +<?xml version="1.0" encoding="UTF-8"?> > > +<project-modules id="moduleCoreId" project-version="1.5.0"> > > + <wb-module deploy-name="data_provider_web"> > > + <wb-resource deploy-path="/" source-path="/src/main/webapp"/> > > + <wb-resource deploy-path="/WEB-INF/classes" source-path="/ > > src/main/resources"/> > > + <wb-resource deploy-path="/WEB-INF/classes" source-path="/ > > src/main/java"/> > > + <wb-resource deploy-path="/WEB-INF/classes" source-path="/ > > src/test/java"/> > > + <wb-resource deploy-path="/WEB-INF/classes" source-path="/ > > src/test/resources"/> > > + <dependent-module deploy-path="/WEB-INF/lib" > > handle="module:/resource/data_provider_core/data_provider_core"> > > + <dependency-type>uses</dependency-type> > > + </dependent-module> > > + <property name="context-root" value="data_provider_web"/> > > + <property name="java-output-path"/> > > + </wb-module> > > +</project-modules> > > > > Added: trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.common.project.facet.core.xml > > =================================================================== > > --- trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.common.project.facet.core.xml > > (rev 0) > > +++ trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.common.project.facet.core.xml 2009-10-12 23:12:11 > > UTC (rev 192) > > @@ -0,0 +1,5 @@ > > +<?xml version="1.0" encoding="UTF-8"?> > > +<faceted-project> > > + <installed facet="jst.java" version="1.4"/> > > + <installed facet="jst.web" version="2.3"/> > > +</faceted-project> > > > > Added: trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.jsdt.ui.superType.container > > =================================================================== > > --- trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.jsdt.ui.superType.container > > (rev 0) > > +++ trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.jsdt.ui.superType.container 2009-10-12 23:12:11 UTC > > (rev 192) > > @@ -0,0 +1 @@ > > +org.eclipse.wst.jsdt.launching.baseBrowserLibrary > > \ No newline at end of file > > > > Added: trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.jsdt.ui.superType.name > > =================================================================== > > --- trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.jsdt.ui.superType.name > (rev 0) > > +++ trunk/data_provider/data_provider_web/.settings/ > > org.eclipse.wst.jsdt.ui.superType.name 2009-10-12 23:12:11 UTC > (rev > > 192) > > @@ -0,0 +1 @@ > > +Window > > \ No newline at end of file > > > > Added: trunk/data_provider/data_provider_web/.settings/ > > org.maven.ide.eclipse.prefs > > =================================================================== > > --- trunk/data_provider/data_provider_web/.settings/ > > org.maven.ide.eclipse.prefs (rev 0) > > +++ trunk/data_provider/data_provider_web/.settings/ > > org.maven.ide.eclipse.prefs 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,9 @@ > > +#Mon Oct 12 12:59:49 EDT 2009 > > +activeProfiles= > > +eclipse.preferences.version=1 > > +fullBuildGoals=process-test-resources > > +includeModules=false > > +resolveWorkspaceProjects=true > > +resourceFilterGoals=process-resources resources\:testResources > > +skipCompilerPlugin=true > > +version=1 > > > > Added: trunk/data_provider/data_provider_web/pom.xml > > =================================================================== > > --- trunk/data_provider/data_provider_web/ > > pom.xml (rev 0) > > +++ trunk/data_provider/data_provider_web/pom.xml 2009-10-12 > > 23:12:11 UTC (rev 192) > > @@ -0,0 +1,299 @@ > > +<?xml version="1.0" encoding="UTF-8"?><project> > > + <parent> > > + <artifactId>data_provider</artifactId> > > + <groupId>org.treebase.oai</groupId> > > + <version>0.0.1-SNAPSHOT</version> > > + </parent> > > + <modelVersion>4.0.0</modelVersion> > > + <groupId>org.treebase.oai</groupId> > > + <artifactId>data_provider_web</artifactId> > > + <packaging>war</packaging> > > + <name>data_provider_web Maven Webapp</name> > > + <version>0.0.1-SNAPSHOT</version> > > + <url>http://maven.apache.org</url> > > + <build> > > + <defaultGoal>install</defaultGoal> > > + <resources> > > + <resource> > > + <directory>src/main/resources</directory> > > + </resource> > > + </resources> > > + <finalName>data_provider_web</finalName> > > + <plugins> > > + > > + <!-- Ant Task plugin--> > > + <plugin> > > + <artifactId>maven-antrun-plugin</artifactId> > > + <executions> > > + > > + <!-- make sure jdbc.properties is copied since it's not > > checked in --> > > + <execution> > > + <id>copy-jdbc-properties</id> > > + <phase>install</phase> > > + <configuration> > > + <tasks> > > + <copy > todir="${basedir}/src/main/resources" > > + failonerror="true" > verbose="true" overwrite="true"> > > + <fileset > dir="${env.JDBC_HOME}"> > > + <include > name="jdbc.properties"/> > > + </fileset> > > + </copy> > > + </tasks> > > + </configuration> > > + <goals><goal>run</goal></goals> > > + </execution> > > + > > + </executions> > > + </plugin> > > + > > + <plugin> > > + <groupId>org.codehaus.mojo</groupId> > > + <artifactId>tomcat-maven-plugin</artifactId> > > + <version>1.0-SNAPSHOT</version> > > + </plugin> > > + > > + </plugins> > > + </build> > > + > > + <pluginRepositories> > > + <pluginRepository> > > + <id>Maven Snapshots</id> > > + <url>http://snapshots.maven.codehaus.org/maven2</url> > > + <snapshots><enabled>true</enabled></snapshots> > > + <releases><enabled>false</enabled></releases> > > + </pluginRepository> > > + </pluginRepositories> > > + > > + <dependencies> > > + > > + <dependency> > > + <groupId>org.treebase.oai</groupId> > > + <artifactId>data_provider_core</artifactId> > > + <version>0.0.1-SNAPSHOT</version> > > + </dependency> > > + > > + <dependency> > > + <groupId>javax.servlet</groupId> > > + <artifactId>jstl</artifactId> > > + <version>1.1.2</version> > > + </dependency> > > + <dependency> > > + <groupId>javax.mail</groupId> > > + <artifactId>mail</artifactId> > > + <version>1.4</version> > > + </dependency> > > + <dependency> > > + <groupId>xalan</groupId> > > + <artifactId>xalan</artifactId> > > + <version>2.7.0</version> > > + </dependency> > > + <dependency> > > + <groupId>commons-beanutils</groupId> > > + <artifactId>commons-beanutils</artifactId> > > + <version>1.7.0</version> > > + </dependency> > > + <dependency> > > + <groupId>commons-validator</groupId> > > + <artifactId>commons-validator</artifactId> > > + <version>1.1.4</version> > > + </dependency> > > + <dependency> > > + <groupId>commons-logging</groupId> > > + <artifactId>commons-logging</artifactId> > > + <version>1.1</version> > > + </dependency> > > + <dependency> > > + <groupId>commons-lang</groupId> > > + <artifactId>commons-lang</artifactId> > > + <version>2.3</version> > > + </dependency> > > + <dependency> > > + <groupId>taglibs</groupId> > > + <artifactId>standard</artifactId> > > + <version>1.1.2</version> > > + </dependency> > > + <dependency> > > + <groupId>taglibs</groupId> > > + <artifactId>string</artifactId> > > + <version>1.1.0</version> > > + </dependency> > > + <dependency> > > + <groupId>struts</groupId> > > + <artifactId>struts</artifactId> > > + <version>1.2.9</version> > > + </dependency> > > + <dependency> > > + <groupId>opensymphony</groupId> > > + <artifactId>sitemesh</artifactId> > > + <version>2.3</version> > > + </dependency> > > + <dependency> > > + <groupId>displaytag</groupId> > > + <artifactId>displaytag</artifactId> > > + <version>1.1.1</version> > > + </dependency> > > + <dependency> > > + <groupId>struts-menu</groupId> > > + <artifactId>struts-menu</artifactId> > > + <version>2.3</version> > > + > > + <exclusions> > > + <!-- Older versions are not needed --> > > + <exclusion> > > + <groupId>taglibs</groupId> > > + <artifactId>string</artifactId> > > + </exclusion> > > + > > + > > + <exclusion> > > + <groupId>commons-lang</groupId> > > + <artifactId>commons-lang</artifactId> > > + </exclusion> > > + > > + <exclusion> > > + <groupId>commons-logging</groupId> > > + <artifactId>commons-logging</artifactId> > > + </exclusion> > > + > > + <exclusion> > > + <groupId>javax.servlet</groupId> > > + <artifactId>servlet-api</artifactId> > > + </exclusion> > > + > > + <exclusion> > > + <groupId>javax.servlet</groupId> > > + <artifactId>jstl</artifactId> > > + </exclusion> > > + > > + </exclusions> > > + > > + > > + </dependency> > > + <dependency> > > + <groupId>org.acegisecurity</groupId> > > + <artifactId>acegi-security</artifactId> > > + <version>1.0.1</version> > > + <exclusions> > > + <!-- exclude older versions of Spring --> > > + <exclusion> > > + <groupId>org.springframework</groupId> > > + <artifactId>spring-remoting</artifactId> > > + </exclusion> > > + <exclusion> > > + <groupId>org.springframework</groupId> > > + <artifactId>spring-jdbc</artifactId> > > + </exclusion> > > + <exclusion> > > + <groupId>org.springframework</groupId> > > + <artifactId>spring-support</artifactId> > > + </exclusion> > > + <exclusion> > > + <groupId>org.springframework</groupId> > > + <artifactId>spring-mock</artifactId> > > + </exclusion> > > + </exclusions> > > + </dependency> > > + <dependency> > > + <groupId>springmodules</groupId> > > + <artifactId>springmodules-validator</artifactId> > > + <version>0.1</version> > > + </dependency> > > + <dependency> > > + <groupId>commons-fileupload</groupId> > > + <artifactId>commons-fileupload</artifactId> > > + <version>1.2</version> > > + > > + <exclusions> > > + <exclusion> > > + <groupId>javax.servlet</groupId> > > + <artifactId>servlet-api</artifactId> > > + </exclusion> > > + </exclusions> > > + </dependency> > > + <dependency> > > + <groupId>commons-io</groupId> > > + <artifactId>commons-io</artifactId> > > + <version>1.3</version> > > + </dependency> > > + <dependency> > > + <groupId>org.directwebremoting</groupId> > > + <artifactId>dwr</artifactId> > > + <version>2.0.rc2</version> > > + <exclusions> > > + <exclusion> > > + <groupId>org.springframework</groupId> > > + <artifactId>spring</artifactId> > > + </exclusion> > > + <exclusion> > > + <groupId>org.hibernate</groupId> > > + <artifactId>hibernate</artifactId> > > + </exclusion> > > + </exclusions> > > + </dependency> > > + <dependency> > > + <groupId>jmock</groupId> > > + <artifactId>jmock</artifactId> > > + <version>1.0.1</version> > > + </dependency> > > + <dependency> > > + <groupId>javax.xml.soap</groupId> > > + <artifactId>saaj-api</artifactId> > > + <version>1.3</version> > > + <scope>runtime</scope> > > + </dependency> > > + <dependency> > > + <groupId>zing.z3950.org</groupId> > > + <artifactId>cql-java</artifactId> > > + <version>1.0</version> > > + </dependency> > > + <dependency> > > + <groupId>javax.servlet</groupId> > > + <artifactId>servlet-api</artifactId> > > + <version>2.4</version> > > + </dependency> > > + > > + <!-- used by Spring framework --> > > + <!--Older ersion not needed--> > > + <!-- Commented on April 23, 2008 Madhu--> > > + <!--dependency> > > + <groupId>javax.activation</groupId> > > + <artifactId>activation</artifactId> > > + <version>1.1</version> > > + </dependency--> > > + > > + <!-- used by Spring framework --> > > + > > + <!-- Jin 05/12/08: do we need xalan? dependency--> > > + > > + <!-- remove 05/13/08 to avoid xml parser conflicts> > > + <dependency> > > + <groupId>org.springframework.ws</groupId> > > + <artifactId>spring-ws-core</artifactId> > > + <version>1.0.2</version> > > + </dependency> > > + --> > > + > > + <!-- remove 05/13/08 to avoid xml parser conflicts.> > > + <dependency> > > + <groupId>jaxen</groupId> > > + <artifactId>jaxen</artifactId> > > + <version>1.1</version> > > + </dependency> > > + --> > > + > > + <!--commented on April 23, 2008 Madhu--> > > + <!--dependency> > > + <groupId>com.sun.xml.messaging.saaj</groupId> > > + <artifactId>saaj-impl</artifactId> > > + <version>1.3</version> > > + <scope>runtime</scope> > > + </dependency--> > > + > > + > > + </dependencies> > > + <dependencyManagement> > > + <dependencies> > > + </dependencies> > > + </dependencyManagement> > > + > > +</project> > > \ No newline at end of file > > > > Added: trunk/data_provider/data_provider_web/src/main/webapp/META- > > INF/MANIFEST.MF > > =================================================================== > > --- trunk/data_provider/data_provider_web/src/main/webapp/META-INF/ > > MANIFEST.MF (rev 0) > > +++ trunk/data_provider/data_provider_web/src/main/webapp/META-INF/ > > MANIFEST.MF 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,3 @@ > > +Manifest-Version: 1.0 > > +Class-Path: > > + > > > > Added: trunk/data_provider/data_provider_web/src/main/webapp/WEB-INF/ > > web.xml > > =================================================================== > > --- trunk/data_provider/data_provider_web/src/main/webapp/WEB-INF/ > > web.xml (rev 0) > > +++ trunk/data_provider/data_provider_web/src/main/webapp/WEB-INF/ > > web.xml 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,7 @@ > > +<!DOCTYPE web-app PUBLIC > > + "-//Sun Microsystems, Inc.//DTD Web Application 2.3//EN" > > + "http://java.sun.com/dtd/web-app_2_3.dtd" > > > + > > +<web-app> > > + <display-name>Archetype Created Web Application</display-name> > > +</web-app> > > > > Added: trunk/data_provider/data_provider_web/src/main/webapp/index.jsp > > =================================================================== > > --- trunk/data_provider/data_provider_web/src/main/webapp/ > > index.jsp (rev 0) > > +++ trunk/data_provider/data_provider_web/src/main/webapp/index.jsp > > 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,5 @@ > > +<html> > > +<body> > > +<h2>Hello World!</h2> > > +</body> > > +</html> > > > > Added: trunk/data_provider/pom.xml > > =================================================================== > > --- trunk/data_provider/pom.xml (rev 0) > > +++ trunk/data_provider/pom.xml 2009-10-12 23:12:11 UTC (rev 192) > > @@ -0,0 +1,271 @@ > > +<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi=" > http://www.w3.org/2001/XMLSchema-instance > > " > > + xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 > http://maven.apache.org/maven-v4_0_0.xsd > > "> > > + <modelVersion>4.0.0</modelVersion> > > + <groupId>org.treebase.oai</groupId> > > + <artifactId>data_provider</artifactId> > > + <packaging>pom</packaging> > > + <version>0.0.1-SNAPSHOT</version> > > + <name>data_provider</name> > > + <url>http://maven.apache.org</url> > > + <!-- issueManagement> > > + <system>FogBugz</system> > > + <url>https://www.xxx.org/bugz</url> > > + </issueManagement--> > > + <!-- inceptionYear></inceptionYear--> > > + <!-- scm> > > + <connection>scm:svn:http://nladr-cvs.sdsc.edu/svn/CIPRES/ > > treebase/trunk</connection> > > + <developerConnection>scm:svn:http://nladr-cvs.sdsc.edu/svn/ > > CIPRES/treebase/trunk</developerConnection> > > + <url>http://nladr-cvs.sdsc.edu/svn/cipresdev/trunk</url> > > + </scm--> > > + <!-- mailingLists> > > + <mailingList> > > + <name>treebase-dev</name> > > + <subscribe></subscribe> > > + <unsubscribe></unsubscribe> > > + <archive></archive> > > + </mailingList> > > + </mailingLists --> > > + <developers> > > + <developer> > > + <id>youjun</id> > > + <name>Youjun Guo</name> > > + <email>you...@ya...</email> > > + <organization>Peabody.Yale</organization> > > + <organizationUrl>http://www.yale.edu</organizationUrl> > > + <roles> > > + <role>developer</role> > > + </roles> > > + <timezone>-7</timezone> > > + </developer> > > + </developers> > > + <licenses> > > + <license> > > + <name></name> > > + <url></url> > > + <distribution></distribution> > > + <comments/> > > + </license> > > + </licenses> > > + <modules> > > + <module>data_provider_core</module> > > + <module>data_provider_web</module> > > + </modules> > > +<pluginRepositories> > > + </pluginRepositories> > > + <dependencies> > > + > > + <dependency> > > + <groupId>org.springframework</groupId> > > + <artifactId>spring</artifactId> > > + <version>2.0.7</version> > > + </dependency> > > + > > + <dependency> > > + <groupId>org.springframework</groupId> > > + <artifactId>spring-mock</artifactId> > > + <version>2.0.7</version> > > + <scope>test</scope> > > + </dependency> > > + > > + <dependency> > > + <groupId>junit</groupId> > > + <artifactId>junit</artifactId> > > + <version>3.8.1</version> > > + <scope>test</scope> > > + </dependency> > > + > > + <dependency> > > + <groupId>log4j</groupId> > > + <artifactId>log4j</artifactId> > > + <version>1.2.13</version> > > + </dependency> > > + > > + </dependencies> > > + > > + <reporting> > > + <plugins> > > + <plugin> > > + <artifactId>maven-surefire-report-plugin</artifactId> > > + </plugin> > > + <plugin> > > + <artifactId>maven-clover-plugin</artifactId> > > + </plugin> > > + <!-- plugin> > > + <groupId>org.apache.maven.plugins</groupId> > > + <artifactId>maven-jxr-plugin</artifactId> > > + </plugin --> > > + <!-- plugin> > > + <groupId>org.apache.maven.plugins</groupId> > > + <artifactId>maven-javadoc-plugin</artifactId> > > + <configuration> > > + <links> > > + <link>http://java.sun.com/j2se/1.4.2/docs/api</link> > > + <link>http://plexus.codehaus.org/ref/1.0-alpha-9/ > > apidocs</link> > > + </links> > > + <aggregate>true</aggregate> > > + </configuration> > > + </plugin --> > > + <!-- plugin> > > + <groupId>org.apache.maven.plugins</groupId> > > + <artifactId>maven-pmd-plugin</artifactId> > > + <configuration> > > + <targetjdk>1.5</targetjdk> > > + <rulesets> > > + <ruleset>/rulesets/basic.xml</ruleset> > > + <ruleset>/rulesets/imports.xml</ruleset> > > + <ruleset>/rulesets/unusedcode.xml</ruleset> > > + <ruleset>/rulesets/finalizers.xml</ruleset> > > + </rulesets> > > + <format>xml</format> > > + <linkXref>true</linkXref> > > + <sourceEncoding>utf-8</sourceEncoding> > > + <minimumTokens>100</minimumTokens> > > + </configuration> > > + </plugin --> > > + <!-- plugin> > > + <groupId>org.apache.maven.plugins</groupId> > > + <artifactId>maven-checkstyle-plugin</artifactId> > > + <configuration> > > + <configLocation>config/maven_checks.xml</configLocation> > > + </configuration> > > + </plugin --> > > + <plugin> > > + <groupId>org.codehaus.mojo</groupId> > > + <artifactId>taglist-maven-plugin</artifactId> > > + <configuration> > > + <tags> > > + <tag>TODO</tag> > > + <tag>@todo</tag> > > + <tag>FIXME</tag> > > + <tag>XXX</tag> > > + </tags> > > + </configuration> > > + </plugin> > > + <plugin> > > + <groupId>org.codehaus.mojo</groupId> > > + <artifactId>cobertura-maven-plugin</artifactId> > > + </plugin> > > + <plugin> > > + <groupId>org.apache.maven.plugins</groupId> > > + <artifactId>maven-project-info-reports-plugin</artifactId> > > + </plugin> > > + </plugins> > > + </reporting> > > + > > + <dependencyManagement> > > + <dependencies> > > + <dependency> > > + <groupId>org.treebase.oai</groupId> > > + <artifactId>data_provider_core</artifactId> > > + <version>${project.version}</version> > > + </dependency> > > + <dependency> > > + <groupId>org.treebase.oai</groupId> > > + <artifactId>data_provider_web</artifactId> > > + <version>${project.version}</version> > > + </dependency> > > + </dependencies> > > + </dependencyManagement> > > + > > + <organization> > > + <name></name> > > + <url></url> > > + </organization> > > + > > + <!-- order of repositories used to compile the project --> > > + <repositories> > > + <repository> > > + <id>m2.remote.repos</id> > > + <name>Maven 2 Remote Repository</name> > > + <url>http://treebase.sourceforge.net/maven2/</url> > > + </repository> > > + <repository> > > + <id>maven2</id> > > + <name>Default Maven2 Repository</name> > > + <url>http://repo1.maven.org/maven2</url> > > + </repository> > > + <repository> > > + <id>repository.jboss.org</id> > > + <name>JBoss Maven Repository</name> > > + <url>http://repository.jboss.org/maven2</url> > > + <layout>default</layout> > > + </repository> > > + <repository> > > + <id>postgresql</id> > > + <url>http://jdbc.postgresql.org</url> > > + </repository> > > + </repositories> > > + <!-- make sure java 1.5 is used for annotations support --> > > + <build> > > + <plugins> > > + <plugin> > > + <groupId>org.apache.maven.plugins</groupId> > > + <artifactId>maven-compiler-plugin</artifactId> > > + <configuration> > > + <source>1.5</source> > > + <target>1.5</target> > > + </configuration> > > + </plugin> > > + </plugins> > > + </build> > > + > > + <distributionManagement> > > + <site> > > + <id>website</id> > > + <url></url> > > + </site> > > + </distributionManagement> > > + > > + <profiles> > > + > > + <!--profile> > > + <id>xxx</id> > > + <activation> > > + <property> > > + <name>enablexxxprofile</name> > > + <value>true</value> > > + </property> > > + </activation> > > + <build> > > + <plugins> > > + <plugin> > > + <groupId>org.apache.maven.plugins</groupId> > > + <artifactId>maven-pmd-plugin</artifactId> > > + <executions> > > + <execution> > > + <goals> > > + <goal>check</goal> > > + </goals> > > + </execution> > > + </executions> > > + </plugin> > > + <plugin> > > + <groupId>org.codehaus.mojo</groupId> > > + <artifactId>cobertura-maven-plugin</artifactId> > > + <configuration> > > + <check> > > + <totalLineRate>80</totalLineRate> > > + <totalBranchRate>100</totalBranchRate> > > + </check> > > + </configuration> > > + <executions> > > + <execution> > > + <id>clean</id> > > + <goals> > > + <goal>clean</goal> > > + </goals> > > + </execution> > > + <execution> > > + <id>check</id> > > + <goals> > > + <goal>check</goal> > > + </goals> > > + </execution> > > + </executions> > > + </plugin> > > + </plugins> > > + </build> > > + </profile--> > > + > > + </profiles> > > +</project> > > > > Added: trunk/data_provider/target/classes/org/treebase/oai/ > > data_provider/App.class > > =================================================================== > > (Binary files differ) > > > > > > Property changes on: trunk/data_provider/target/classes/org/treebase/ > > oai/data_provider/App.class > > ___________________________________________________________________ > > Added: svn:mime-type > > + application/octet-stream > > > > Added: trunk/data_provider/target/test-classes/org/treebase/oai/ > > data_provider/AppTest.class > > =================================================================== > > (Binary files differ) > > > > > > Property changes on: trunk/data_provider/target/test-classes/org/ > > treebase/oai/data_provider/AppTest.class > > ___________________________________________________________________ > > Added: svn:mime-type > > + application/octet-stream > > > > > > This was sent by the SourceForge.net collaborative development > > platform, the world's largest Open Source development site. > > > > > ------------------------------------------------------------------------------ > > Come build with us! The BlackBerry(R) Developer Conference in SF, CA > > is the only developer event you need to attend this year. Jumpstart > > your > > developing skills, take BlackBerry mobile applications to market and > > stay > > ahead of the curve. Join us from November 9 - 12, 2009. Register now! > > http://p.sf.net/sfu/devconference > > _______________________________________________ > > Treebase-guts mailing list > > Tre...@li... > > https://lists.sourceforge.net/lists/listinfo/treebase-guts > > > > > > ------------------------------------------------------------------------------ > Come build with us! The BlackBerry(R) Developer Conference in SF, CA > is the only developer event you need to attend this year. Jumpstart your > developing skills, take BlackBerry mobile applications to market and stay > ahead of the curve. Join us from November 9 - 12, 2009. Register now! > http://p.sf.net/sfu/devconference > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > |
|
From: Hilmar L. <hl...@gm...> - 2009-10-13 02:35:36
|
Assuming that the data_provider directory is only going to hold the OAI-PMH provider code, I suggest that we rename that to what it is: oai-pmh-provider Otherwise (if there are going to be multiple data_provider_apis), put an appropriately named subdirectory, and rename the directory accordingly (such as data_provider_apis) too. -hilmar On Oct 12, 2009, at 7:12 PM, yo...@us... wrote: > Revision: 192 > http://treebase.svn.sourceforge.net/treebase/? > rev=192&view=rev > Author: youjun > Date: 2009-10-12 23:12:11 +0000 (Mon, 12 Oct 2009) > > Log Message: > ----------- > oai_pmh data_provider > > Added Paths: > ----------- > trunk/data_provider/ > trunk/data_provider/.classpath > trunk/data_provider/.project > trunk/data_provider/.settings/ > trunk/data_provider/.settings/org.eclipse.jdt.core.prefs > trunk/data_provider/.settings/org.maven.ide.eclipse.prefs > trunk/data_provider/data_provider_core/ > trunk/data_provider/data_provider_core/.classpath > trunk/data_provider/data_provider_core/.project > trunk/data_provider/data_provider_core/.settings/ > trunk/data_provider/data_provider_core/.settings/ > org.eclipse.jdt.core.prefs > trunk/data_provider/data_provider_core/.settings/ > org.eclipse.wst.common.component > trunk/data_provider/data_provider_core/.settings/ > org.eclipse.wst.common.project.facet.core.xml > trunk/data_provider/data_provider_core/.settings/ > org.maven.ide.eclipse.prefs > trunk/data_provider/data_provider_core/pom.xml > trunk/data_provider/data_provider_core/src/ > trunk/data_provider/data_provider_core/src/main/ > trunk/data_provider/data_provider_core/src/main/java/ > trunk/data_provider/data_provider_core/src/main/java/META-INF/ > trunk/data_provider/data_provider_core/src/main/java/META-INF/ > MANIFEST.MF > trunk/data_provider/data_provider_core/src/main/java/org/ > trunk/data_provider/data_provider_core/src/main/java/org/treebase/ > trunk/data_provider/data_provider_core/src/main/java/org/treebase/ > oai/ > trunk/data_provider/data_provider_core/src/main/java/org/treebase/ > oai/App.java > trunk/data_provider/data_provider_core/src/main/resources/ > trunk/data_provider/data_provider_core/src/test/ > trunk/data_provider/data_provider_core/src/test/java/ > trunk/data_provider/data_provider_core/src/test/java/org/ > trunk/data_provider/data_provider_core/src/test/java/org/treebase/ > trunk/data_provider/data_provider_core/src/test/java/org/treebase/ > oai/ > trunk/data_provider/data_provider_core/src/test/java/org/treebase/ > oai/AppTest.java > trunk/data_provider/data_provider_core/src/test/resources/ > trunk/data_provider/data_provider_core/target/ > trunk/data_provider/data_provider_core/target/classes/ > trunk/data_provider/data_provider_core/target/classes/META-INF/ > trunk/data_provider/data_provider_core/target/classes/META-INF/ > MANIFEST.MF > trunk/data_provider/data_provider_core/target/classes/org/ > trunk/data_provider/data_provider_core/target/classes/org/treebase/ > trunk/data_provider/data_provider_core/target/classes/org/ > treebase/oai/ > trunk/data_provider/data_provider_core/target/classes/org/ > treebase/oai/App.class > trunk/data_provider/data_provider_core/target/test-classes/ > trunk/data_provider/data_provider_core/target/test-classes/org/ > trunk/data_provider/data_provider_core/target/test-classes/org/ > treebase/ > trunk/data_provider/data_provider_core/target/test-classes/org/ > treebase/oai/ > trunk/data_provider/data_provider_core/target/test-classes/org/ > treebase/oai/AppTest.class > trunk/data_provider/data_provider_web/ > trunk/data_provider/data_provider_web/.classpath > trunk/data_provider/data_provider_web/.project > trunk/data_provider/data_provider_web/.settings/ > trunk/data_provider/data_provider_web/.settings/.jsdtscope > trunk/data_provider/data_provider_web/.settings/ > org.eclipse.jdt.core.prefs > trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.common.component > trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.common.project.facet.core.xml > trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.jsdt.ui.superType.container > trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.jsdt.ui.superType.name > trunk/data_provider/data_provider_web/.settings/ > org.maven.ide.eclipse.prefs > trunk/data_provider/data_provider_web/pom.xml > trunk/data_provider/data_provider_web/src/ > trunk/data_provider/data_provider_web/src/main/ > trunk/data_provider/data_provider_web/src/main/java/ > trunk/data_provider/data_provider_web/src/main/resources/ > trunk/data_provider/data_provider_web/src/main/webapp/ > trunk/data_provider/data_provider_web/src/main/webapp/META-INF/ > trunk/data_provider/data_provider_web/src/main/webapp/META-INF/ > MANIFEST.MF > trunk/data_provider/data_provider_web/src/main/webapp/WEB-INF/ > trunk/data_provider/data_provider_web/src/main/webapp/WEB-INF/lib/ > trunk/data_provider/data_provider_web/src/main/webapp/WEB-INF/ > web.xml > trunk/data_provider/data_provider_web/src/main/webapp/index.jsp > trunk/data_provider/data_provider_web/src/test/ > trunk/data_provider/data_provider_web/src/test/java/ > trunk/data_provider/data_provider_web/src/test/resources/ > trunk/data_provider/data_provider_web/target/ > trunk/data_provider/data_provider_web/target/classes/ > trunk/data_provider/data_provider_web/target/test-classes/ > trunk/data_provider/pom.xml > trunk/data_provider/target/ > trunk/data_provider/target/classes/ > trunk/data_provider/target/classes/org/ > trunk/data_provider/target/classes/org/treebase/ > trunk/data_provider/target/classes/org/treebase/oai/ > trunk/data_provider/target/classes/org/treebase/oai/data_provider/ > trunk/data_provider/target/classes/org/treebase/oai/data_provider/ > App.class > trunk/data_provider/target/test-classes/ > trunk/data_provider/target/test-classes/org/ > trunk/data_provider/target/test-classes/org/treebase/ > trunk/data_provider/target/test-classes/org/treebase/oai/ > trunk/data_provider/target/test-classes/org/treebase/oai/ > data_provider/ > trunk/data_provider/target/test-classes/org/treebase/oai/ > data_provider/AppTest.class > > Added: trunk/data_provider/.classpath > =================================================================== > --- trunk/data_provider/.classpath (rev 0) > +++ trunk/data_provider/.classpath 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,6 @@ > +<?xml version="1.0" encoding="UTF-8"?> > +<classpath> > + <classpathentry kind="con" > path="org.eclipse.jdt.launching.JRE_CONTAINER"/> > + <classpathentry kind="con" > path="org.maven.ide.eclipse.MAVEN2_CLASSPATH_CONTAINER"/> > + <classpathentry kind="output" path="target/classes"/> > +</classpath> > > Added: trunk/data_provider/.project > =================================================================== > --- trunk/data_provider/.project (rev 0) > +++ trunk/data_provider/.project 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,23 @@ > +<?xml version="1.0" encoding="UTF-8"?> > +<projectDescription> > + <name>data_provider</name> > + <comment></comment> > + <projects> > + </projects> > + <buildSpec> > + <buildCommand> > + <name>org.eclipse.jdt.core.javabuilder</name> > + <arguments> > + </arguments> > + </buildCommand> > + <buildCommand> > + <name>org.maven.ide.eclipse.maven2Builder</name> > + <arguments> > + </arguments> > + </buildCommand> > + </buildSpec> > + <natures> > + <nature>org.eclipse.jdt.core.javanature</nature> > + <nature>org.maven.ide.eclipse.maven2Nature</nature> > + </natures> > +</projectDescription> > > Added: trunk/data_provider/.settings/org.eclipse.jdt.core.prefs > =================================================================== > --- trunk/data_provider/.settings/ > org.eclipse.jdt.core.prefs (rev 0) > +++ trunk/data_provider/.settings/org.eclipse.jdt.core.prefs > 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,5 @@ > +#Mon Oct 12 12:48:37 EDT 2009 > +eclipse.preferences.version=1 > +org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.2 > +org.eclipse.jdt.core.compiler.compliance=1.4 > +org.eclipse.jdt.core.compiler.source=1.3 > > Added: trunk/data_provider/.settings/org.maven.ide.eclipse.prefs > =================================================================== > --- trunk/data_provider/.settings/ > org.maven.ide.eclipse.prefs (rev 0) > +++ trunk/data_provider/.settings/org.maven.ide.eclipse.prefs > 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,9 @@ > +#Mon Oct 12 12:48:36 EDT 2009 > +activeProfiles= > +eclipse.preferences.version=1 > +fullBuildGoals=process-test-resources > +includeModules=false > +resolveWorkspaceProjects=true > +resourceFilterGoals=process-resources resources\:testResources > +skipCompilerPlugin=true > +version=1 > > Added: trunk/data_provider/data_provider_core/.classpath > =================================================================== > --- trunk/data_provider/ > data_provider_core/.classpath (rev 0) > +++ trunk/data_provider/data_provider_core/.classpath 2009-10-12 > 23:12:11 UTC (rev 192) > @@ -0,0 +1,11 @@ > +<?xml version="1.0" encoding="UTF-8"?> > +<classpath> > + <classpathentry kind="src" output="target/classes" path="src/main/ > java"/> > + <classpathentry kind="src" output="target/test-classes" path="src/ > test/java"/> > + <classpathentry kind="src" path="src/main/resources"/> > + <classpathentry kind="src" path="src/test/resources"/> > + <classpathentry kind="con" > path="org.eclipse.jdt.launching.JRE_CONTAINER"/> > + <classpathentry kind="con" > path="org.maven.ide.eclipse.MAVEN2_CLASSPATH_CONTAINER"/> > + <classpathentry kind="con" > path="org.eclipse.jst.j2ee.internal.module.container"/> > + <classpathentry kind="output" path="target/classes"/> > +</classpath> > > Added: trunk/data_provider/data_provider_core/.project > =================================================================== > --- trunk/data_provider/ > data_provider_core/.project (rev 0) > +++ trunk/data_provider/data_provider_core/.project 2009-10-12 > 23:12:11 UTC (rev 192) > @@ -0,0 +1,36 @@ > +<?xml version="1.0" encoding="UTF-8"?> > +<projectDescription> > + <name>data_provider_core</name> > + <comment></comment> > + <projects> > + </projects> > + <buildSpec> > + <buildCommand> > + <name>org.eclipse.wst.common.project.facet.core.builder</name> > + <arguments> > + </arguments> > + </buildCommand> > + <buildCommand> > + <name>org.eclipse.jdt.core.javabuilder</name> > + <arguments> > + </arguments> > + </buildCommand> > + <buildCommand> > + <name>org.maven.ide.eclipse.maven2Builder</name> > + <arguments> > + </arguments> > + </buildCommand> > + <buildCommand> > + <name>org.eclipse.wst.validation.validationbuilder</name> > + <arguments> > + </arguments> > + </buildCommand> > + </buildSpec> > + <natures> > + <nature>org.eclipse.jem.workbench.JavaEMFNature</nature> > + <nature>org.eclipse.wst.common.modulecore.ModuleCoreNature</nature> > + <nature>org.eclipse.jdt.core.javanature</nature> > + <nature>org.maven.ide.eclipse.maven2Nature</nature> > + <nature>org.eclipse.wst.common.project.facet.core.nature</nature> > + </natures> > +</projectDescription> > > Added: trunk/data_provider/data_provider_core/.settings/ > org.eclipse.jdt.core.prefs > =================================================================== > --- trunk/data_provider/data_provider_core/.settings/ > org.eclipse.jdt.core.prefs (rev 0) > +++ trunk/data_provider/data_provider_core/.settings/ > org.eclipse.jdt.core.prefs 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,7 @@ > +#Mon Oct 12 16:25:16 EDT 2009 > +eclipse.preferences.version=1 > +org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.2 > +org.eclipse.jdt.core.compiler.compliance=1.4 > +org.eclipse.jdt.core.compiler.problem.assertIdentifier=warning > +org.eclipse.jdt.core.compiler.problem.enumIdentifier=warning > +org.eclipse.jdt.core.compiler.source=1.3 > > Added: trunk/data_provider/data_provider_core/.settings/ > org.eclipse.wst.common.component > =================================================================== > --- trunk/data_provider/data_provider_core/.settings/ > org.eclipse.wst.common.component (rev 0) > +++ trunk/data_provider/data_provider_core/.settings/ > org.eclipse.wst.common.component 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,9 @@ > +<?xml version="1.0" encoding="UTF-8"?> > +<project-modules id="moduleCoreId" project-version="1.5.0"> > + <wb-module deploy-name="data_provider_core"> > + <wb-resource deploy-path="/" source-path="/src/main/java"/> > + <wb-resource deploy-path="/" source-path="/src/main/ > resource"/> > + <wb-resource deploy-path="/" source-path="/src/test/ > resources"/> > + <wb-resource deploy-path="/" source-path="/src/main/ > resources"/> > + </wb-module> > +</project-modules> > > Added: trunk/data_provider/data_provider_core/.settings/ > org.eclipse.wst.common.project.facet.core.xml > =================================================================== > --- trunk/data_provider/data_provider_core/.settings/ > org.eclipse.wst.common.project.facet.core.xml > (rev 0) > +++ trunk/data_provider/data_provider_core/.settings/ > org.eclipse.wst.common.project.facet.core.xml 2009-10-12 23:12:11 > UTC (rev 192) > @@ -0,0 +1,5 @@ > +<?xml version="1.0" encoding="UTF-8"?> > +<faceted-project> > + <installed facet="jst.java" version="1.4"/> > + <installed facet="jst.utility" version="1.0"/> > +</faceted-project> > > Added: trunk/data_provider/data_provider_core/.settings/ > org.maven.ide.eclipse.prefs > =================================================================== > --- trunk/data_provider/data_provider_core/.settings/ > org.maven.ide.eclipse.prefs (rev 0) > +++ trunk/data_provider/data_provider_core/.settings/ > org.maven.ide.eclipse.prefs 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,9 @@ > +#Mon Oct 12 12:55:06 EDT 2009 > +activeProfiles= > +eclipse.preferences.version=1 > +fullBuildGoals=process-test-resources > +includeModules=false > +resolveWorkspaceProjects=true > +resourceFilterGoals=process-resources resources\:testResources > +skipCompilerPlugin=true > +version=1 > > Added: trunk/data_provider/data_provider_core/pom.xml > =================================================================== > --- trunk/data_provider/data_provider_core/ > pom.xml (rev 0) > +++ trunk/data_provider/data_provider_core/pom.xml 2009-10-12 > 23:12:11 UTC (rev 192) > @@ -0,0 +1,164 @@ > +<?xml version="1.0" encoding="UTF-8"?><project> > + <parent> > + <artifactId>data_provider</artifactId> > + <groupId>org.treebase.oai</groupId> > + <version>0.0.1-SNAPSHOT</version> > + </parent> > + <modelVersion>4.0.0</modelVersion> > + <groupId>org.treebase.oai</groupId> > + <artifactId>data_provider_core</artifactId> > + <packaging>jar</packaging> > + <name>data_provider_core</name> > + <version>0.0.1-SNAPSHOT</version> > + <url>http://maven.apache.org</url> > + > + <build> > + <defaultGoal>install</defaultGoal> > + </build> > + > + <dependencies> > + > + <dependency> > + <groupId>postgresql</groupId> > + <artifactId>postgresql</artifactId> > + <version>8.3-603.jdbc3</version> > + </dependency> > + > + > + <dependency> > + <groupId>org.acegisecurity</groupId> > + <artifactId>acegi-security</artifactId> > + <version>1.0.1</version> > + <exclusions> > + <!-- Maven thinks 2.0 is newer than 2.1--> > + <exclusion> > + <groupId>commons-lang</groupId> > + <artifactId>commons-lang</artifactId> > + </exclusion> > + <!-- exclude older versions of Spring --> > + <exclusion> > + <groupId>org.springframework</groupId> > + <artifactId>spring-remoting</artifactId> > + </exclusion> > + <exclusion> > + <groupId>org.springframework</groupId> > + <artifactId>spring-jdbc</artifactId> > + </exclusion> > + <exclusion> > + <groupId>org.springframework</groupId> > + <artifactId>spring-support</artifactId> > + </exclusion> > + </exclusions> > + </dependency> > + > + <dependency> > + <groupId>c3p0</groupId> > + <artifactId>c3p0</artifactId> > + <version>0.9.1.2</version> > + </dependency> > + > + > + <dependency> > + <groupId>org.hibernate</groupId> > + <artifactId>hibernate-annotations</artifactId> > + <version>3.3.1.GA</version> > + <exclusions> > + <exclusion> > + <groupId>asm</groupId> > + <artifactId>asm</artifactId> > + </exclusion> > + <exclusion> > + <groupId>asm</groupId> > + <artifactId>asm-attrs</artifactId> > + </exclusion> > + <exclusion> > + <groupId>cglib</groupId> > + <artifactId>cglib</artifactId> > + </exclusion> > + </exclusions> > + </dependency> > + > + <dependency> > + <groupId>cglib</groupId> > + <artifactId>cglib-nodep</artifactId> > + <version>2.1_3</version> > + </dependency> > + > + <dependency> > + <groupId>commons-lang</groupId> > + <artifactId>commons-lang</artifactId> > + <version>2.1</version> > + </dependency> > + > + <dependency> > + <groupId>ibm</groupId> > + <artifactId>db2jcc</artifactId> > + <version>2.6.80</version> > + </dependency> > + > + > + > + <dependency> > + <groupId>jdom</groupId> > + <artifactId>jdom</artifactId> > + <version>1.1</version> > + </dependency> > + > + <dependency> > + <groupId>org.apache.cxf</groupId> > + <artifactId>cxf-rt-frontend-jaxws</artifactId> > + <version>2.1.1</version> > + <exclusions> > + <exclusion> > + <groupId>asm</groupId> > + <artifactId>asm</artifactId> > + </exclusion> > + > + <exclusion> > + <groupId>org.slf4j</groupId> > + <artifactId>slf4j-jdk14</artifactId> > + </exclusion> > + </exclusions> > + </dependency> > + > + <dependency> > + <groupId>org.apache.cxf</groupId> > + <artifactId>cxf-rt-transports-http</artifactId> > + <version>2.1.1</version> > + <exclusions> > + <exclusion> > + <groupId>asm</groupId> > + <artifactId>asm</artifactId> > + </exclusion> > + > + <exclusion> > + <groupId>org.slf4j</groupId> > + <artifactId>slf4j-jdk14</artifactId> > + </exclusion> > + </exclusions> > + </dependency> > + > + <dependency> > + <groupId>org.apache.cxf</groupId> > + <artifactId>cxf-rt-transports-http-jetty</artifactId> > + <version>2.1.1</version> > + <exclusions> > + <exclusion> > + <groupId>asm</groupId> > + <artifactId>asm</artifactId> > + </exclusion> > + <exclusion> > + <groupId>org.slf4j</groupId> > + <artifactId>slf4j-jdk14</artifactId> > + </exclusion> > + </exclusions> > + </dependency> > + <dependency> > + <groupId>dom4j</groupId> > + <artifactId>dom4j</artifactId> > + <version>1.6.1</version> > + </dependency> > + > + </dependencies> > + > +</project> > \ No newline at end of file > > Added: trunk/data_provider/data_provider_core/src/main/java/META-INF/ > MANIFEST.MF > =================================================================== > --- trunk/data_provider/data_provider_core/src/main/java/META-INF/ > MANIFEST.MF (rev 0) > +++ trunk/data_provider/data_provider_core/src/main/java/META-INF/ > MANIFEST.MF 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,3 @@ > +Manifest-Version: 1.0 > +Class-Path: > + > > Added: trunk/data_provider/data_provider_core/src/main/java/org/ > treebase/oai/App.java > =================================================================== > --- trunk/data_provider/data_provider_core/src/main/java/org/ > treebase/oai/App.java (rev 0) > +++ trunk/data_provider/data_provider_core/src/main/java/org/ > treebase/oai/App.java 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,13 @@ > +package org.treebase.oai; > + > +/** > + * Hello world! > + * > + */ > +public class App > +{ > + public static void main( String[] args ) > + { > + System.out.println( "Hello World!" ); > + } > +} > > Added: trunk/data_provider/data_provider_core/src/test/java/org/ > treebase/oai/AppTest.java > =================================================================== > --- trunk/data_provider/data_provider_core/src/test/java/org/ > treebase/oai/AppTest.java (rev 0) > +++ trunk/data_provider/data_provider_core/src/test/java/org/ > treebase/oai/AppTest.java 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,38 @@ > +package org.treebase.oai; > + > +import junit.framework.Test; > +import junit.framework.TestCase; > +import junit.framework.TestSuite; > + > +/** > + * Unit test for simple App. > + */ > +public class AppTest > + extends TestCase > +{ > + /** > + * Create the test case > + * > + * @param testName name of the test case > + */ > + public AppTest( String testName ) > + { > + super( testName ); > + } > + > + /** > + * @return the suite of tests being tested > + */ > + public static Test suite() > + { > + return new TestSuite( AppTest.class ); > + } > + > + /** > + * Rigourous Test :-) > + */ > + public void testApp() > + { > + assertTrue( true ); > + } > +} > > Added: trunk/data_provider/data_provider_core/target/classes/META- > INF/MANIFEST.MF > =================================================================== > --- trunk/data_provider/data_provider_core/target/classes/META-INF/ > MANIFEST.MF (rev 0) > +++ trunk/data_provider/data_provider_core/target/classes/META-INF/ > MANIFEST.MF 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,3 @@ > +Manifest-Version: 1.0 > +Class-Path: > + > > Added: trunk/data_provider/data_provider_core/target/classes/org/ > treebase/oai/App.class > =================================================================== > (Binary files differ) > > > Property changes on: trunk/data_provider/data_provider_core/target/ > classes/org/treebase/oai/App.class > ___________________________________________________________________ > Added: svn:mime-type > + application/octet-stream > > Added: trunk/data_provider/data_provider_core/target/test-classes/ > org/treebase/oai/AppTest.class > =================================================================== > (Binary files differ) > > > Property changes on: trunk/data_provider/data_provider_core/target/ > test-classes/org/treebase/oai/AppTest.class > ___________________________________________________________________ > Added: svn:mime-type > + application/octet-stream > > Added: trunk/data_provider/data_provider_web/.classpath > =================================================================== > --- trunk/data_provider/ > data_provider_web/.classpath (rev 0) > +++ trunk/data_provider/data_provider_web/.classpath 2009-10-12 > 23:12:11 UTC (rev 192) > @@ -0,0 +1,16 @@ > +<?xml version="1.0" encoding="UTF-8"?> > +<classpath> > + <classpathentry excluding="**" kind="src" output="target/classes" > path="src/main/resources"/> > + <classpathentry kind="src" path="src/main/java"/> > + <classpathentry kind="src" path="src/test/java"/> > + <classpathentry kind="src" path="src/test/resources"/> > + <classpathentry kind="con" > path="org.eclipse.jdt.launching.JRE_CONTAINER"/> > + <classpathentry kind="con" > path="org.maven.ide.eclipse.MAVEN2_CLASSPATH_CONTAINER"> > + <attributes> > + <attribute name="org.eclipse.jst.component.dependency" value="/ > WEB-INF/lib"/> > + </attributes> > + </classpathentry> > + <classpathentry kind="con" > path="org.eclipse.jst.j2ee.internal.web.container"/> > + <classpathentry kind="con" > path="org.eclipse.jst.j2ee.internal.module.container"/> > + <classpathentry kind="output" path="target/classes"/> > +</classpath> > > Added: trunk/data_provider/data_provider_web/.project > =================================================================== > --- trunk/data_provider/ > data_provider_web/.project (rev 0) > +++ trunk/data_provider/data_provider_web/.project 2009-10-12 > 23:12:11 UTC (rev 192) > @@ -0,0 +1,42 @@ > +<?xml version="1.0" encoding="UTF-8"?> > +<projectDescription> > + <name>data_provider_web</name> > + <comment></comment> > + <projects> > + </projects> > + <buildSpec> > + <buildCommand> > + <name>org.eclipse.wst.jsdt.core.javascriptValidator</name> > + <arguments> > + </arguments> > + </buildCommand> > + <buildCommand> > + <name>org.eclipse.wst.common.project.facet.core.builder</name> > + <arguments> > + </arguments> > + </buildCommand> > + <buildCommand> > + <name>org.eclipse.jdt.core.javabuilder</name> > + <arguments> > + </arguments> > + </buildCommand> > + <buildCommand> > + <name>org.eclipse.wst.validation.validationbuilder</name> > + <arguments> > + </arguments> > + </buildCommand> > + <buildCommand> > + <name>org.maven.ide.eclipse.maven2Builder</name> > + <arguments> > + </arguments> > + </buildCommand> > + </buildSpec> > + <natures> > + <nature>org.eclipse.jem.workbench.JavaEMFNature</nature> > + <nature>org.eclipse.wst.common.modulecore.ModuleCoreNature</nature> > + <nature>org.eclipse.jdt.core.javanature</nature> > + <nature>org.maven.ide.eclipse.maven2Nature</nature> > + <nature>org.eclipse.wst.common.project.facet.core.nature</nature> > + <nature>org.eclipse.wst.jsdt.core.jsNature</nature> > + </natures> > +</projectDescription> > > Added: trunk/data_provider/data_provider_web/.settings/.jsdtscope > =================================================================== > --- trunk/data_provider/ > data_provider_web/.settings/.jsdtscope (rev 0) > +++ trunk/data_provider/data_provider_web/.settings/.jsdtscope > 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,11 @@ > +<?xml version="1.0" encoding="UTF-8"?> > +<classpath> > + <classpathentry kind="con" > path="org.eclipse.wst.jsdt.launching.JRE_CONTAINER"/> > + <classpathentry kind="con" > path="org.eclipse.wst.jsdt.launching.WebProject"> > + <attributes> > + <attribute name="hide" value="true"/> > + </attributes> > + </classpathentry> > + <classpathentry kind="con" > path="org.eclipse.wst.jsdt.launching.baseBrowserLibrary"/> > + <classpathentry kind="output" path=""/> > +</classpath> > > Added: trunk/data_provider/data_provider_web/.settings/ > org.eclipse.jdt.core.prefs > =================================================================== > --- trunk/data_provider/data_provider_web/.settings/ > org.eclipse.jdt.core.prefs (rev 0) > +++ trunk/data_provider/data_provider_web/.settings/ > org.eclipse.jdt.core.prefs 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,7 @@ > +#Mon Oct 12 12:59:49 EDT 2009 > +eclipse.preferences.version=1 > +org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.2 > +org.eclipse.jdt.core.compiler.compliance=1.4 > +org.eclipse.jdt.core.compiler.problem.assertIdentifier=warning > +org.eclipse.jdt.core.compiler.problem.enumIdentifier=warning > +org.eclipse.jdt.core.compiler.source=1.3 > > Added: trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.common.component > =================================================================== > --- trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.common.component (rev 0) > +++ trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.common.component 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,15 @@ > +<?xml version="1.0" encoding="UTF-8"?> > +<project-modules id="moduleCoreId" project-version="1.5.0"> > + <wb-module deploy-name="data_provider_web"> > + <wb-resource deploy-path="/" source-path="/src/main/webapp"/> > + <wb-resource deploy-path="/WEB-INF/classes" source-path="/ > src/main/resources"/> > + <wb-resource deploy-path="/WEB-INF/classes" source-path="/ > src/main/java"/> > + <wb-resource deploy-path="/WEB-INF/classes" source-path="/ > src/test/java"/> > + <wb-resource deploy-path="/WEB-INF/classes" source-path="/ > src/test/resources"/> > + <dependent-module deploy-path="/WEB-INF/lib" > handle="module:/resource/data_provider_core/data_provider_core"> > + <dependency-type>uses</dependency-type> > + </dependent-module> > + <property name="context-root" value="data_provider_web"/> > + <property name="java-output-path"/> > + </wb-module> > +</project-modules> > > Added: trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.common.project.facet.core.xml > =================================================================== > --- trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.common.project.facet.core.xml > (rev 0) > +++ trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.common.project.facet.core.xml 2009-10-12 23:12:11 > UTC (rev 192) > @@ -0,0 +1,5 @@ > +<?xml version="1.0" encoding="UTF-8"?> > +<faceted-project> > + <installed facet="jst.java" version="1.4"/> > + <installed facet="jst.web" version="2.3"/> > +</faceted-project> > > Added: trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.jsdt.ui.superType.container > =================================================================== > --- trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.jsdt.ui.superType.container > (rev 0) > +++ trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.jsdt.ui.superType.container 2009-10-12 23:12:11 UTC > (rev 192) > @@ -0,0 +1 @@ > +org.eclipse.wst.jsdt.launching.baseBrowserLibrary > \ No newline at end of file > > Added: trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.jsdt.ui.superType.name > =================================================================== > --- trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.jsdt.ui.superType.name (rev 0) > +++ trunk/data_provider/data_provider_web/.settings/ > org.eclipse.wst.jsdt.ui.superType.name 2009-10-12 23:12:11 UTC (rev > 192) > @@ -0,0 +1 @@ > +Window > \ No newline at end of file > > Added: trunk/data_provider/data_provider_web/.settings/ > org.maven.ide.eclipse.prefs > =================================================================== > --- trunk/data_provider/data_provider_web/.settings/ > org.maven.ide.eclipse.prefs (rev 0) > +++ trunk/data_provider/data_provider_web/.settings/ > org.maven.ide.eclipse.prefs 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,9 @@ > +#Mon Oct 12 12:59:49 EDT 2009 > +activeProfiles= > +eclipse.preferences.version=1 > +fullBuildGoals=process-test-resources > +includeModules=false > +resolveWorkspaceProjects=true > +resourceFilterGoals=process-resources resources\:testResources > +skipCompilerPlugin=true > +version=1 > > Added: trunk/data_provider/data_provider_web/pom.xml > =================================================================== > --- trunk/data_provider/data_provider_web/ > pom.xml (rev 0) > +++ trunk/data_provider/data_provider_web/pom.xml 2009-10-12 > 23:12:11 UTC (rev 192) > @@ -0,0 +1,299 @@ > +<?xml version="1.0" encoding="UTF-8"?><project> > + <parent> > + <artifactId>data_provider</artifactId> > + <groupId>org.treebase.oai</groupId> > + <version>0.0.1-SNAPSHOT</version> > + </parent> > + <modelVersion>4.0.0</modelVersion> > + <groupId>org.treebase.oai</groupId> > + <artifactId>data_provider_web</artifactId> > + <packaging>war</packaging> > + <name>data_provider_web Maven Webapp</name> > + <version>0.0.1-SNAPSHOT</version> > + <url>http://maven.apache.org</url> > + <build> > + <defaultGoal>install</defaultGoal> > + <resources> > + <resource> > + <directory>src/main/resources</directory> > + </resource> > + </resources> > + <finalName>data_provider_web</finalName> > + <plugins> > + > + <!-- Ant Task plugin--> > + <plugin> > + <artifactId>maven-antrun-plugin</artifactId> > + <executions> > + > + <!-- make sure jdbc.properties is copied since it's not > checked in --> > + <execution> > + <id>copy-jdbc-properties</id> > + <phase>install</phase> > + <configuration> > + <tasks> > + <copy todir="${basedir}/src/main/resources" > + failonerror="true" verbose="true" overwrite="true"> > + <fileset dir="${env.JDBC_HOME}"> > + <include name="jdbc.properties"/> > + </fileset> > + </copy> > + </tasks> > + </configuration> > + <goals><goal>run</goal></goals> > + </execution> > + > + </executions> > + </plugin> > + > + <plugin> > + <groupId>org.codehaus.mojo</groupId> > + <artifactId>tomcat-maven-plugin</artifactId> > + <version>1.0-SNAPSHOT</version> > + </plugin> > + > + </plugins> > + </build> > + > + <pluginRepositories> > + <pluginRepository> > + <id>Maven Snapshots</id> > + <url>http://snapshots.maven.codehaus.org/maven2</url> > + <snapshots><enabled>true</enabled></snapshots> > + <releases><enabled>false</enabled></releases> > + </pluginRepository> > + </pluginRepositories> > + > + <dependencies> > + > + <dependency> > + <groupId>org.treebase.oai</groupId> > + <artifactId>data_provider_core</artifactId> > + <version>0.0.1-SNAPSHOT</version> > + </dependency> > + > + <dependency> > + <groupId>javax.servlet</groupId> > + <artifactId>jstl</artifactId> > + <version>1.1.2</version> > + </dependency> > + <dependency> > + <groupId>javax.mail</groupId> > + <artifactId>mail</artifactId> > + <version>1.4</version> > + </dependency> > + <dependency> > + <groupId>xalan</groupId> > + <artifactId>xalan</artifactId> > + <version>2.7.0</version> > + </dependency> > + <dependency> > + <groupId>commons-beanutils</groupId> > + <artifactId>commons-beanutils</artifactId> > + <version>1.7.0</version> > + </dependency> > + <dependency> > + <groupId>commons-validator</groupId> > + <artifactId>commons-validator</artifactId> > + <version>1.1.4</version> > + </dependency> > + <dependency> > + <groupId>commons-logging</groupId> > + <artifactId>commons-logging</artifactId> > + <version>1.1</version> > + </dependency> > + <dependency> > + <groupId>commons-lang</groupId> > + <artifactId>commons-lang</artifactId> > + <version>2.3</version> > + </dependency> > + <dependency> > + <groupId>taglibs</groupId> > + <artifactId>standard</artifactId> > + <version>1.1.2</version> > + </dependency> > + <dependency> > + <groupId>taglibs</groupId> > + <artifactId>string</artifactId> > + <version>1.1.0</version> > + </dependency> > + <dependency> > + <groupId>struts</groupId> > + <artifactId>struts</artifactId> > + <version>1.2.9</version> > + </dependency> > + <dependency> > + <groupId>opensymphony</groupId> > + <artifactId>sitemesh</artifactId> > + <version>2.3</version> > + </dependency> > + <dependency> > + <groupId>displaytag</groupId> > + <artifactId>displaytag</artifactId> > + <version>1.1.1</version> > + </dependency> > + <dependency> > + <groupId>struts-menu</groupId> > + <artifactId>struts-menu</artifactId> > + <version>2.3</version> > + > + <exclusions> > + <!-- Older versions are not needed --> > + <exclusion> > + <groupId>taglibs</groupId> > + <artifactId>string</artifactId> > + </exclusion> > + > + > + <exclusion> > + <groupId>commons-lang</groupId> > + <artifactId>commons-lang</artifactId> > + </exclusion> > + > + <exclusion> > + <groupId>commons-logging</groupId> > + <artifactId>commons-logging</artifactId> > + </exclusion> > + > + <exclusion> > + <groupId>javax.servlet</groupId> > + <artifactId>servlet-api</artifactId> > + </exclusion> > + > + <exclusion> > + <groupId>javax.servlet</groupId> > + <artifactId>jstl</artifactId> > + </exclusion> > + > + </exclusions> > + > + > + </dependency> > + <dependency> > + <groupId>org.acegisecurity</groupId> > + <artifactId>acegi-security</artifactId> > + <version>1.0.1</version> > + <exclusions> > + <!-- exclude older versions of Spring --> > + <exclusion> > + <groupId>org.springframework</groupId> > + <artifactId>spring-remoting</artifactId> > + </exclusion> > + <exclusion> > + <groupId>org.springframework</groupId> > + <artifactId>spring-jdbc</artifactId> > + </exclusion> > + <exclusion> > + <groupId>org.springframework</groupId> > + <artifactId>spring-support</artifactId> > + </exclusion> > + <exclusion> > + <groupId>org.springframework</groupId> > + <artifactId>spring-mock</artifactId> > + </exclusion> > + </exclusions> > + </dependency> > + <dependency> > + <groupId>springmodules</groupId> > + <artifactId>springmodules-validator</artifactId> > + <version>0.1</version> > + </dependency> > + <dependency> > + <groupId>commons-fileupload</groupId> > + <artifactId>commons-fileupload</artifactId> > + <version>1.2</version> > + > + <exclusions> > + <exclusion> > + <groupId>javax.servlet</groupId> > + <artifactId>servlet-api</artifactId> > + </exclusion> > + </exclusions> > + </dependency> > + <dependency> > + <groupId>commons-io</groupId> > + <artifactId>commons-io</artifactId> > + <version>1.3</version> > + </dependency> > + <dependency> > + <groupId>org.directwebremoting</groupId> > + <artifactId>dwr</artifactId> > + <version>2.0.rc2</version> > + <exclusions> > + <exclusion> > + <groupId>org.springframework</groupId> > + <artifactId>spring</artifactId> > + </exclusion> > + <exclusion> > + <groupId>org.hibernate</groupId> > + <artifactId>hibernate</artifactId> > + </exclusion> > + </exclusions> > + </dependency> > + <dependency> > + <groupId>jmock</groupId> > + <artifactId>jmock</artifactId> > + <version>1.0.1</version> > + </dependency> > + <dependency> > + <groupId>javax.xml.soap</groupId> > + <artifactId>saaj-api</artifactId> > + <version>1.3</version> > + <scope>runtime</scope> > + </dependency> > + <dependency> > + <groupId>zing.z3950.org</groupId> > + <artifactId>cql-java</artifactId> > + <version>1.0</version> > + </dependency> > + <dependency> > + <groupId>javax.servlet</groupId> > + <artifactId>servlet-api</artifactId> > + <version>2.4</version> > + </dependency> > + > + <!-- used by Spring framework --> > + <!--Older ersion not needed--> > + <!-- Commented on April 23, 2008 Madhu--> > + <!--dependency> > + <groupId>javax.activation</groupId> > + <artifactId>activation</artifactId> > + <version>1.1</version> > + </dependency--> > + > + <!-- used by Spring framework --> > + > + <!-- Jin 05/12/08: do we need xalan? dependency--> > + > + <!-- remove 05/13/08 to avoid xml parser conflicts> > + <dependency> > + <groupId>org.springframework.ws</groupId> > + <artifactId>spring-ws-core</artifactId> > + <version>1.0.2</version> > + </dependency> > + --> > + > + <!-- remove 05/13/08 to avoid xml parser conflicts.> > + <dependency> > + <groupId>jaxen</groupId> > + <artifactId>jaxen</artifactId> > + <version>1.1</version> > + </dependency> > + --> > + > + <!--commented on April 23, 2008 Madhu--> > + <!--dependency> > + <groupId>com.sun.xml.messaging.saaj</groupId> > + <artifactId>saaj-impl</artifactId> > + <version>1.3</version> > + <scope>runtime</scope> > + </dependency--> > + > + > + </dependencies> > + <dependencyManagement> > + <dependencies> > + </dependencies> > + </dependencyManagement> > + > +</project> > \ No newline at end of file > > Added: trunk/data_provider/data_provider_web/src/main/webapp/META- > INF/MANIFEST.MF > =================================================================== > --- trunk/data_provider/data_provider_web/src/main/webapp/META-INF/ > MANIFEST.MF (rev 0) > +++ trunk/data_provider/data_provider_web/src/main/webapp/META-INF/ > MANIFEST.MF 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,3 @@ > +Manifest-Version: 1.0 > +Class-Path: > + > > Added: trunk/data_provider/data_provider_web/src/main/webapp/WEB-INF/ > web.xml > =================================================================== > --- trunk/data_provider/data_provider_web/src/main/webapp/WEB-INF/ > web.xml (rev 0) > +++ trunk/data_provider/data_provider_web/src/main/webapp/WEB-INF/ > web.xml 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,7 @@ > +<!DOCTYPE web-app PUBLIC > + "-//Sun Microsystems, Inc.//DTD Web Application 2.3//EN" > + "http://java.sun.com/dtd/web-app_2_3.dtd" > > + > +<web-app> > + <display-name>Archetype Created Web Application</display-name> > +</web-app> > > Added: trunk/data_provider/data_provider_web/src/main/webapp/index.jsp > =================================================================== > --- trunk/data_provider/data_provider_web/src/main/webapp/ > index.jsp (rev 0) > +++ trunk/data_provider/data_provider_web/src/main/webapp/index.jsp > 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,5 @@ > +<html> > +<body> > +<h2>Hello World!</h2> > +</body> > +</html> > > Added: trunk/data_provider/pom.xml > =================================================================== > --- trunk/data_provider/pom.xml (rev 0) > +++ trunk/data_provider/pom.xml 2009-10-12 23:12:11 UTC (rev 192) > @@ -0,0 +1,271 @@ > +<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance > " > + xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd > "> > + <modelVersion>4.0.0</modelVersion> > + <groupId>org.treebase.oai</groupId> > + <artifactId>data_provider</artifactId> > + <packaging>pom</packaging> > + <version>0.0.1-SNAPSHOT</version> > + <name>data_provider</name> > + <url>http://maven.apache.org</url> > + <!-- issueManagement> > + <system>FogBugz</system> > + <url>https://www.xxx.org/bugz</url> > + </issueManagement--> > + <!-- inceptionYear></inceptionYear--> > + <!-- scm> > + <connection>scm:svn:http://nladr-cvs.sdsc.edu/svn/CIPRES/ > treebase/trunk</connection> > + <developerConnection>scm:svn:http://nladr-cvs.sdsc.edu/svn/ > CIPRES/treebase/trunk</developerConnection> > + <url>http://nladr-cvs.sdsc.edu/svn/cipresdev/trunk</url> > + </scm--> > + <!-- mailingLists> > + <mailingList> > + <name>treebase-dev</name> > + <subscribe></subscribe> > + <unsubscribe></unsubscribe> > + <archive></archive> > + </mailingList> > + </mailingLists --> > + <developers> > + <developer> > + <id>youjun</id> > + <name>Youjun Guo</name> > + <email>you...@ya...</email> > + <organization>Peabody.Yale</organization> > + <organizationUrl>http://www.yale.edu</organizationUrl> > + <roles> > + <role>developer</role> > + </roles> > + <timezone>-7</timezone> > + </developer> > + </developers> > + <licenses> > + <license> > + <name></name> > + <url></url> > + <distribution></distribution> > + <comments/> > + </license> > + </licenses> > + <modules> > + <module>data_provider_core</module> > + <module>data_provider_web</module> > + </modules> > +<pluginRepositories> > + </pluginRepositories> > + <dependencies> > + > + <dependency> > + <groupId>org.springframework</groupId> > + <artifactId>spring</artifactId> > + <version>2.0.7</version> > + </dependency> > + > + <dependency> > + <groupId>org.springframework</groupId> > + <artifactId>spring-mock</artifactId> > + <version>2.0.7</version> > + <scope>test</scope> > + </dependency> > + > + <dependency> > + <groupId>junit</groupId> > + <artifactId>junit</artifactId> > + <version>3.8.1</version> > + <scope>test</scope> > + </dependency> > + > + <dependency> > + <groupId>log4j</groupId> > + <artifactId>log4j</artifactId> > + <version>1.2.13</version> > + </dependency> > + > + </dependencies> > + > + <reporting> > + <plugins> > + <plugin> > + <artifactId>maven-surefire-report-plugin</artifactId> > + </plugin> > + <plugin> > + <artifactId>maven-clover-plugin</artifactId> > + </plugin> > + <!-- plugin> > + <groupId>org.apache.maven.plugins</groupId> > + <artifactId>maven-jxr-plugin</artifactId> > + </plugin --> > + <!-- plugin> > + <groupId>org.apache.maven.plugins</groupId> > + <artifactId>maven-javadoc-plugin</artifactId> > + <configuration> > + <links> > + <link>http://java.sun.com/j2se/1.4.2/docs/api</link> > + <link>http://plexus.codehaus.org/ref/1.0-alpha-9/ > apidocs</link> > + </links> > + <aggregate>true</aggregate> > + </configuration> > + </plugin --> > + <!-- plugin> > + <groupId>org.apache.maven.plugins</groupId> > + <artifactId>maven-pmd-plugin</artifactId> > + <configuration> > + <targetjdk>1.5</targetjdk> > + <rulesets> > + <ruleset>/rulesets/basic.xml</ruleset> > + <ruleset>/rulesets/imports.xml</ruleset> > + <ruleset>/rulesets/unusedcode.xml</ruleset> > + <ruleset>/rulesets/finalizers.xml</ruleset> > + </rulesets> > + <format>xml</format> > + <linkXref>true</linkXref> > + <sourceEncoding>utf-8</sourceEncoding> > + <minimumTokens>100</minimumTokens> > + </configuration> > + </plugin --> > + <!-- plugin> > + <groupId>org.apache.maven.plugins</groupId> > + <artifactId>maven-checkstyle-plugin</artifactId> > + <configuration> > + <configLocation>config/maven_checks.xml</configLocation> > + </configuration> > + </plugin --> > + <plugin> > + <groupId>org.codehaus.mojo</groupId> > + <artifactId>taglist-maven-plugin</artifactId> > + <configuration> > + <tags> > + <tag>TODO</tag> > + <tag>@todo</tag> > + <tag>FIXME</tag> > + <tag>XXX</tag> > + </tags> > + </configuration> > + </plugin> > + <plugin> > + <groupId>org.codehaus.mojo</groupId> > + <artifactId>cobertura-maven-plugin</artifactId> > + </plugin> > + <plugin> > + <groupId>org.apache.maven.plugins</groupId> > + <artifactId>maven-project-info-reports-plugin</artifactId> > + </plugin> > + </plugins> > + </reporting> > + > + <dependencyManagement> > + <dependencies> > + <dependency> > + <groupId>org.treebase.oai</groupId> > + <artifactId>data_provider_core</artifactId> > + <version>${project.version}</version> > + </dependency> > + <dependency> > + <groupId>org.treebase.oai</groupId> > + <artifactId>data_provider_web</artifactId> > + <version>${project.version}</version> > + </dependency> > + </dependencies> > + </dependencyManagement> > + > + <organization> > + <name></name> > + <url></url> > + </organization> > + > + <!-- order of repositories used to compile the project --> > + <repositories> > + <repository> > + <id>m2.remote.repos</id> > + <name>Maven 2 Remote Repository</name> > + <url>http://treebase.sourceforge.net/maven2/</url> > + </repository> > + <repository> > + <id>maven2</id> > + <name>Default Maven2 Repository</name> > + <url>http://repo1.maven.org/maven2</url> > + </repository> > + <repository> > + <id>repository.jboss.org</id> > + <name>JBoss Maven Repository</name> > + <url>http://repository.jboss.org/maven2</url> > + <layout>default</layout> > + </repository> > + <repository> > + <id>postgresql</id> > + <url>http://jdbc.postgresql.org</url> > + </repository> > + </repositories> > + <!-- make sure java 1.5 is used for annotations support --> > + <build> > + <plugins> > + <plugin> > + <groupId>org.apache.maven.plugins</groupId> > + <artifactId>maven-compiler-plugin</artifactId> > + <configuration> > + <source>1.5</source> > + <target>1.5</target> > + </configuration> > + </plugin> > + </plugins> > + </build> > + > + <distributionManagement> > + <site> > + <id>website</id> > + <url></url> > + </site> > + </distributionManagement> > + > + <profiles> > + > + <!--profile> > + <id>xxx</id> > + <activation> > + <property> > + <name>enablexxxprofile</name> > + <value>true</value> > + </property> > + </activation> > + <build> > + <plugins> > + <plugin> > + <groupId>org.apache.maven.plugins</groupId> > + <artifactId>maven-pmd-plugin</artifactId> > + <executions> > + <execution> > + <goals> > + <goal>check</goal> > + </goals> > + </execution> > + </executions> > + </plugin> > + <plugin> > + <groupId>org.codehaus.mojo</groupId> > + <artifactId>cobertura-maven-plugin</artifactId> > + <configuration> > + <check> > + <totalLineRate>80</totalLineRate> > + <totalBranchRate>100</totalBranchRate> > + </check> > + </configuration> > + <executions> > + <execution> > + <id>clean</id> > + <goals> > + <goal>clean</goal> > + </goals> > + </execution> > + <execution> > + <id>check</id> > + <goals> > + <goal>check</goal> > + </goals> > + </execution> > + </executions> > + </plugin> > + </plugins> > + </build> > + </profile--> > + > + </profiles> > +</project> > > Added: trunk/data_provider/target/classes/org/treebase/oai/ > data_provider/App.class > =================================================================== > (Binary files differ) > > > Property changes on: trunk/data_provider/target/classes/org/treebase/ > oai/data_provider/App.class > ___________________________________________________________________ > Added: svn:mime-type > + application/octet-stream > > Added: trunk/data_provider/target/test-classes/org/treebase/oai/ > data_provider/AppTest.class > =================================================================== > (Binary files differ) > > > Property changes on: trunk/data_provider/target/test-classes/org/ > treebase/oai/data_provider/AppTest.class > ___________________________________________________________________ > Added: svn:mime-type > + application/octet-stream > > > This was sent by the SourceForge.net collaborative development > platform, the world's largest Open Source development site. > > ------------------------------------------------------------------------------ > Come build with us! The BlackBerry(R) Developer Conference in SF, CA > is the only developer event you need to attend this year. Jumpstart > your > developing skills, take BlackBerry mobile applications to market and > stay > ahead of the curve. Join us from November 9 - 12, 2009. Register now! > http://p.sf.net/sfu/devconference > _______________________________________________ > Treebase-guts mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-guts > |
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From: William P. <wil...@ya...> - 2009-09-30 17:48:51
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On Sep 30, 2009, at 1:42 PM, Ryan Scherle wrote: > http://8ball.sdsc.edu:6666/treebase-web/user/matrixRowList.html?id=447 > > Is that related to the PhyloWS problem, or something else? Shucks. This is a new bug -- the URL is not a PhyloWS one, but perhaps both exceptions are related. I'll add a bug report. bp |
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From: Ryan S. <rsc...@ac...> - 2009-09-30 17:42:37
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> > Can you try now. I've upgraded both of you. Getting closer.... this fixes the issue with the right-hand menu during submission, but I still cannot get to the Export Row Segment Template button. I can find a study, change it to "in progress", and locate the study again. But when I try to view a matrix associated with the study, I get an exception. The links to matrices have this form: http://8ball.sdsc.edu:6666/treebase-web/user/matrixRowList.html?id=447 Is that related to the PhyloWS problem, or something else? --- Ryan |
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From: Hilmar L. <hl...@du...> - 2009-09-29 21:21:42
|
I see. Well, then I'd say that consistency overrules :-) I.e., either follow the pattern or fix all of them. -hilmar On Sep 29, 2009, at 3:59 PM, Ryan Scherle wrote: > Just that all of the other directories at this level start with > "treebase-" > > -- Ryan > > On Sep 29, 2009, at 3:31 PM, Hilmar Lapp wrote: > >> >> On Sep 29, 2009, at 2:58 PM, Ryan Scherle wrote: >> >>> Can I just create a treebase-curation directory at the top >>> level (under trunk)? Or is there another location that would be >>> better? >> >> >> Any reason not to just name it curation? Or to qualify what kind of >> curation, as the treebase context is rather obvious from the >> repository itself :-) >> >> -hilmar >> -- >> =========================================================== >> : Hilmar Lapp -:- Durham, NC -:- hlapp at duke dot edu : >> =========================================================== >> >> >> >> > -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at duke dot edu : =========================================================== |
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From: William P. <wil...@ya...> - 2009-09-29 20:36:55
|
On Sep 29, 2009, at 4:13 PM, Ryan Scherle wrote: > Hmmm. From something that happened earlier today, I thought Rosie's > status had been upgraded. But now I don't think so. At least, the > right-hand menu does not appear for her when viewing an "in progress" > study, so I don't see a way for her to obtain the Row Segment > Template. Can you try now. I've upgraded both of you. bp |
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From: Ryan S. <rsc...@ac...> - 2009-09-29 20:13:18
|
> Ok. We have modified our process to use Endnote. And thanks for > giving Rosie full access. This will help greatly. Hmmm. From something that happened earlier today, I thought Rosie's status had been upgraded. But now I don't think so. At least, the right-hand menu does not appear for her when viewing an "in progress" study, so I don't see a way for her to obtain the Row Segment Template. --- Ryan |
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From: Ryan S. <rsc...@ne...> - 2009-09-29 20:10:57
|
On Sep 29, 2009, at 2:58 PM, Ryan Scherle wrote: > Ok. We have modified our process to use Endnote. And thanks for > giving Rosie full access. This will help greatly. Hmmm. From something that happened earlier today, I thought Rosie's status had been upgraded. But now I don't think so. At least, the right-hand menu does not appear for her when viewing an "in progress" study, so I don't see a way for her to obtain the Row Segment Template. --- Ryan |
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From: Ryan S. <rsc...@ac...> - 2009-09-29 19:59:13
|
Just that all of the other directories at this level start with "treebase-" -- Ryan On Sep 29, 2009, at 3:31 PM, Hilmar Lapp wrote: > > On Sep 29, 2009, at 2:58 PM, Ryan Scherle wrote: > >> Can I just create a treebase-curation directory at the top >> level (under trunk)? Or is there another location that would be >> better? > > > Any reason not to just name it curation? Or to qualify what kind of > curation, as the treebase context is rather obvious from the > repository itself :-) > > -hilmar > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- hlapp at duke dot edu : > =========================================================== > > > > |
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From: Hilmar L. <hl...@du...> - 2009-09-29 19:31:58
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On Sep 29, 2009, at 2:58 PM, Ryan Scherle wrote: > Can I just create a treebase-curation directory at the top > level (under trunk)? Or is there another location that would be > better? Any reason not to just name it curation? Or to qualify what kind of curation, as the treebase context is rather obvious from the repository itself :-) -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at duke dot edu : =========================================================== |
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From: Ryan S. <rsc...@ac...> - 2009-09-29 18:58:51
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On Sep 19, 2009, at 2:47 PM, William Piel wrote: > well, any new citation added to Endnote will not have a legacy > TreeBASE study id number -- so it will be easy to spot when new > records are added. And I don't see why Endnote is any easier at > creating new records than, say, a Google spreadsheet -- both allow it. Ok. We have modified our process to use Endnote. And thanks for giving Rosie full access. This will help greatly. The next task is to start using svn for maintaining the matrix row templates. Can I just create a treebase-curation directory at the top level (under trunk)? Or is there another location that would be better? --- Ryan |
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From: William P. <wil...@ya...> - 2009-09-19 18:48:12
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On Sep 19, 2009, at 12:45 PM, Ryan Scherle wrote: > Thanks. I didn't realize that different portions of the interface used > different methods to retrieve data. Is there a reason to keep it this > way? Probably not. The first was a simple nexus dump developed prior to Rutger developing the PhyloWS interface. > I have found that Endnote makes it too easy to accidentally add > irrelevant or duplicate citations to the database. So now, I think it > may be best to keep the bibliographic information in the Google > spreadsheet (and back it up periodically). But that means making the spreadsheet a lot bigger -- I had deleted a number of columns so that it is more readable. I predict that a lot more errors will be introduced to the data if we are using a Google spreadsheet. > When we have all of the > citations, one person could go through the entire sheet to ensure > consistency in journal names, etc. Does this sound reasonable? Or is > there a way to disallow Endnote from adding new citations? well, any new citation added to Endnote will not have a legacy TreeBASE study id number -- so it will be easy to spot when new records are added. And I don't see why Endnote is any easier at creating new records than, say, a Google spreadsheet -- both allow it. Alternatively, I have a Filemaker document that we could check-in/out of the svn. Filemaker can be set to disallow new records for certain users. bp |
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From: William P. <wil...@ya...> - 2009-09-19 18:44:32
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On Sep 19, 2009, at 12:45 PM, Ryan Scherle wrote: > Unfortunately, I can't test it right now, as the search system on > 8ball is currently down. Not it's not. TreeBASE2 is running on 8ball, except for known bugs. The previous problem was when DB2 was not longer working on gigahertz -- it's now running on bebop, so it should be fine. On Sep 19, 2009, at 1:06 PM, Hilmar Lapp wrote: > Can you elaborate what you mean? The code is on SourceForge - do you > mean something else than committing code changes? I mean that I don't think Youjun has privileges to access 8ball and Rutger is swamped with getting TreeBASE running on treebasedb-dev.nescent.org ; hence I can't vouch for the frequency with which the deployment on 8ball will get updated from changes committed to SF. With Mark and Fran gone from SDSC, we are losing our ability to affect changes there, and he warns us that there is no guarantee that bebop will persist. Hence the move to nescent.org is top priority and bug-fixing will resume in ernest when that's running. In the meantime, however, there are workarounds for both bug #2861595 and bug #2854613. bp |
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From: Hilmar L. <hl...@du...> - 2009-09-19 17:07:09
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(moving to treebase-devel as well) On Sep 19, 2009, at 10:10 AM, William Piel wrote: > Youjun lacks the required privileges for committing changes at SDSC Can you elaborate what you mean? The code is on SourceForge - do you mean something else than committing code changes? -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at duke dot edu : =========================================================== |
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From: Ryan S. <rsc...@ac...> - 2009-09-19 17:01:32
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(moving this onto the treebase-devel list) > So... the upshot is that downloading a matrix from the matrix tab is > a temporary work-around until PhyloWS gets fixed. Thanks. I didn't realize that different portions of the interface used different methods to retrieve data. Is there a reason to keep it this way? Unfortunately, I can't test it right now, as the search system on 8ball is currently down. I forgot to mention that our current curation workflow is now available at https://www.nescent.org/wg_dryad/TreeBASE_Curation I had wanted to manage the bibliographic curation work within Endnote to take advantage of the more structured interface, but after testing a bit, I have found that Endnote makes it too easy to accidentally add irrelevant or duplicate citations to the database. So now, I think it may be best to keep the bibliographic information in the Google spreadsheet (and back it up periodically). When we have all of the citations, one person could go through the entire sheet to ensure consistency in journal names, etc. Does this sound reasonable? Or is there a way to disallow Endnote from adding new citations? --- Ryan |
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From: Jon A. <jon...@du...> - 2009-09-15 20:49:11
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There are actually several ways that we've handled this scenario in the past on our development servers: 1) give all developers sudo rights to restart tomcat. Of course, you can run into file permission issues if multiple developers are deploying to the same webapps folder. 2) create a single user that owns the tomcat folder recursively and can restart the server (Rutger's suggestion) #2 is probably the easiest to manage but you do lose the ability to see who did what. As a side note, has there been any thought to replacing tomcat with jboss? Jboss allows hot deploys. As far as production servers go: We will be setting up a production server when you guys are ready for it. We usually just give access to the sysadmin on production servers. New versions of the application can be committed to a subversion repo, with a server cronjob sucking down new versions. This gives developers full control to deploy new war files without needing any access to the application server. Of course, if we stick with tomcat I'd need to build in some logic in the cron script to restart tomcat. We've also used rsync using keypairs to sync development and production, though I think the subversion method is a better way to go. I'll be happy to set it up whichever way the group decides. -Jon ------------------------------------------------------- Jon Auman Systems Administrator National Evolutionary Synthesis Center Duke University http:www.nescent.org jon...@ne... ------------------------------------------------------ On Sep 15, 2009, at 3:51 PM, Rutger Vos wrote: > Hi all, > > I think it would be handy to have a separate user on > treebasedb-dev.nescent.org to (re)build the source and (re)launch a > tomcat instance. This way, multiple developers can log in as that user > (say, as to...@tr...) and keep things running if > disaster strikes. We currently have this same functionality on 8ball > by sharing Jin Ruan's login credentials, which is i) goofy; ii) > waiting for an overactive sysadmin to delete that account. Thoughts? > > Rutger > > -- > NOTE: I will soon lose my UBC email address, please start using my > gmail address instead (rut...@gm...) > > Dr. Rutger A. Vos > Department of zoology > University of British Columbia > http://www.nexml.org > http://rutgervos.blogspot.com > > ------------------------------------------------------------------------------ > Come build with us! The BlackBerry® Developer Conference in SF, CA > is the only developer event you need to attend this year. Jumpstart > your > developing skills, take BlackBerry mobile applications to market and > stay > ahead of the curve. Join us from November 9-12, 2009. Register > now! > http://p.sf.net/sfu/devconf > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel ------------------------------------------------------- Jon Auman Systems Administrator National Evolutionary Synthesis Center Duke University http:www.nescent.org jon...@ne... ------------------------------------------------------ |
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From: Hilmar L. <hl...@ne...> - 2009-09-15 20:35:59
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We can provide developers with the ability to restart tomcat on development. Keep in mind though that this should never become a requirement or expectation for its proper environment - once we release to the public, the database and application will sit on a production machine that not even I will be able to mess with - you'll have to be a sworn and certified sysadmin to do so :) -hilmar On Sep 15, 2009, at 3:51 PM, Rutger Vos wrote: > Hi all, > > I think it would be handy to have a separate user on > treebasedb-dev.nescent.org to (re)build the source and (re)launch a > tomcat instance. This way, multiple developers can log in as that user > (say, as to...@tr...) and keep things running if > disaster strikes. We currently have this same functionality on 8ball > by sharing Jin Ruan's login credentials, which is i) goofy; ii) > waiting for an overactive sysadmin to delete that account. Thoughts? > > Rutger > > -- > NOTE: I will soon lose my UBC email address, please start using my > gmail address instead (rut...@gm...) > > Dr. Rutger A. Vos > Department of zoology > University of British Columbia > http://www.nexml.org > http://rutgervos.blogspot.com |
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