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does not compile

General Discussion
Matt MacManes
2016-02-19
2016-02-21

  • Matt MacManes

    Matt MacManes - 2016-02-19

    on ubuntu 14.04

    also, 'binary' version linked to in paper required compilation...

    also, error running https://gist.github.com/macmanes/208b1f5f6c7d5bfc1e35

    sudo make -j4
make  all-recursive
make[1]: Entering directory `/share/BinPacker_binary'
Making all in src
make[2]: Entering directory `/share/BinPacker_binary/src'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/share/BinPacker_binary/src'
Making all in ./plugins/fastool/
make[2]: Entering directory `/share/BinPacker_binary/plugins/fastool'
gcc -O2 -std=c99 fastool.c -o fastool -lz
fastool.c: In function ‘process_input’:
fastool.c:43:18: warning: passing argument 1 of ‘kseq_init’ from incompatible pointer type
  seq = kseq_init(stream);
                  ^
In file included from fastool.c:17:0:
kseq.h:146:24: note: expected ‘gzFile’ but argument is of type ‘struct FILE *’
  static inline kseq_t *kseq_init(type_t fd)       \
                        ^
kseq.h:220:2: note: in expansion of macro ‘__KSEQ_BASIC’
  __KSEQ_BASIC(type_t)       \
  ^
fastool.c:19:1: note: in expansion of macro ‘KSEQ_INIT’
 KSEQ_INIT(gzFile, gzread)
 ^
fastool.c: In function ‘main’:
fastool.c:151:18: warning: passing argument 1 of ‘process_input’ from incompatible pointer type
    process_input(fp,reverse_complement, string_to_append, to_fasta, illumina_trinity);
                  ^
fastool.c:39:5: note: expected ‘struct FILE *’ but argument is of type ‘gzFile’
 int process_input(FILE *stream, int rev_comp, char *string, int to_fa, int ilmn_trin) {
     ^
fastool.c:158:3: warning: implicit declaration of function ‘fileno’ [-Wimplicit-function-declaration]
   fp_stdin = gzdopen(fileno(stdin), "rb");
   ^
fastool.c:159:17: warning: passing argument 1 of ‘process_input’ from incompatible pointer type
   process_input(fp_stdin, reverse_complement, string_to_append, to_fasta, illumina_trinity);
                 ^
fastool.c:39:5: note: expected ‘struct FILE *’ but argument is of type ‘gzFile’
 int process_input(FILE *stream, int rev_comp, char *string, int to_fa, int ilmn_trin) {
     ^
make[2]: Leaving directory `/share/BinPacker_binary/plugins/fastool'
Making all in ./plugins/rsem/
make[2]: Entering directory `/share/BinPacker_binary/plugins/rsem'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/share/BinPacker_binary/plugins/rsem'
Making all in ./glpk-4.40/
make[2]: Entering directory `/share/BinPacker_binary/glpk-4.40'
make  all-recursive
make[3]: Entering directory `/share/BinPacker_binary/glpk-4.40'
Making all in include
make[4]: Entering directory `/share/BinPacker_binary/glpk-4.40/include'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/share/BinPacker_binary/glpk-4.40/include'
Making all in src
make[4]: Entering directory `/share/BinPacker_binary/glpk-4.40/src'
/bin/sh ../libtool --tag=CC   --mode=link gcc  -g -O2 -version-info 25:0:25 -export-symbols-regex '^(glp_|_glp_lpx_).*'  -o libglpk.la -rpath /usr/local/lib glpapi01.lo glpapi02.lo glpapi03.lo glpapi04.lo glpapi05.lo glpapi06.lo glpapi07.lo glpapi08.lo glpapi09.lo glpapi10.lo glpapi11.lo glpapi12.lo glpapi13.lo glpapi14.lo glpapi15.lo glpapi16.lo glpapi17.lo glpapi18.lo glpapi19.lo glpapi20.lo glpavl.lo glpbfd.lo glpbfx.lo glpcpx.lo glpdmp.lo glpdmx.lo glpfhv.lo glpgmp.lo glphbm.lo glpini01.lo glpini02.lo glpios01.lo glpios02.lo glpios03.lo glpios04.lo glpios05.lo glpios06.lo glpios07.lo glpios08.lo glpios09.lo glpios10.lo glpipm.lo glpipp01.lo glpipp02.lo glplib01.lo glplib02.lo glplib03.lo glplib04.lo glplib05.lo glplib06.lo glplib07.lo glplib08.lo glplib09.lo glplib10.lo glplib11.lo glplib12.lo glplpf.lo glplpx01.lo glplpx02.lo glplpx03.lo glplpx04.lo glpluf.lo glplux.lo glpmat.lo glpmpl01.lo glpmpl02.lo glpmpl03.lo glpmpl04.lo glpmpl05.lo glpmpl06.lo glpmps.lo glpnet01.lo glpnet02.lo glpnet03.lo glpnet04.lo glpnet05.lo glpnet06.lo glpnet07.lo glpnet08.lo glpnpp01.lo glpnpp02.lo glpnpp03.lo glpqmd.lo glprgr.lo glprng01.lo glprng02.lo glpscf.lo glpscg.lo glpscl.lo glpsdf.lo glpspm.lo glpspx01.lo glpspx02.lo glpsql.lo glpssx01.lo glpssx02.lo glptsp.lo amd_1.lo amd_2.lo amd_aat.lo amd_control.lo amd_defaults.lo amd_dump.lo amd_info.lo amd_order.lo amd_post_tree.lo amd_postorder.lo amd_preprocess.lo amd_valid.lo colamd.lo  -lm
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
../libtool: 1: eval: libobjs+=: not found
../libtool: 1: eval: non_pic_objects+=: not found
../libtool: 1: eval: compile_command+=: not found
../libtool: 1: eval: finalize_command+=: not found
../libtool: 1: eval: libtool_args+=: not found
libtool: link: rm -fr  .libs/libglpk.exp .libs/libglpk.ver
libtool: link: /usr/bin/nm -B   | sed -n -e 's/^.*[  ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[     ][  ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | /bin/sed 's/.* //' | sort | uniq > .libs/libglpk.exp
/usr/bin/nm: 'a.out': No such file
libtool: link: /bin/grep -E -e "^(glp_|_glp_lpx_).*" ".libs/libglpk.exp" > ".libs/libglpk.expT"
libtool: link: mv -f ".libs/libglpk.expT" ".libs/libglpk.exp"
libtool: link: echo "{ global:" > .libs/libglpk.ver
libtool: link:  cat .libs/libglpk.exp | sed -e "s/\(.*\)/\1;/" >> .libs/libglpk.ver
libtool: link:  echo "local: *; };" >> .libs/libglpk.ver
libtool: link:  gcc -shared   -lm    -Wl,-soname -Wl,libglpk.so.0 -Wl,-version-script -Wl,.libs/libglpk.ver -o .libs/libglpk.so.0.25.0
/usr/bin/ld:.libs/libglpk.ver:2: syntax error in VERSION script
collect2: error: ld returned 1 exit status
make[4]: *** [libglpk.la] Error 1
make[4]: Leaving directory `/share/BinPacker_binary/glpk-4.40/src'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/share/BinPacker_binary/glpk-4.40'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/share/BinPacker_binary/glpk-4.40'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/share/BinPacker_binary'
make: *** [all] Error 2
     

    • Juntaosdu

      Juntaosdu - 2016-02-21

      Hi, thank you for using BinPacker!
      Please read the README file before using BinPacker. In the README file, it says that you should run the command: ./update for quickly installing BinPacker.
      Please try again.

       

  • peterfields

    peterfields - 2016-02-19

    Basic compile and execution of the test files works on CentOS-7 if that's any help.

     

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