[Teem-commit] teemdoc/html/tree/src README.txt,1.2,1.3 TODO.txt,1.4,1.5

[Gordon K. <kin...@us...>]

Update of /cvsroot/teem/teemdoc/html/tree/src
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv12505/html/tree/src

Modified Files:
	README.txt TODO.txt 
Log Message:
pre-release text file update

Index: TODO.txt
===================================================================
RCS file: /cvsroot/teem/teemdoc/html/tree/src/TODO.txt,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** TODO.txt	29 Oct 2003 16:09:41 -0000	1.4
--- TODO.txt	7 Mar 2005 18:51:38 -0000	1.5
***************
*** 1,8 ****
! image registration tool for small translational errors
  
! apparent problem w/ gage probing (0,0,0) in a cell-centered thickness-1 volume
  gageIv3Fill: padded size = (258,258,3);
      fd = 4; point (pad: 1) coord = (1,1,0) --> bidx = -66564
  
  air: make floating point stuff more like C++: lots of per-arch #defines
  
--- 1,94 ----
! unu: jhisto works with axis[0] elements when given a single nrrd
  
! gage: avoid padding and re-allocation!
! gage: re-modularize to facilitate probing bricked data
!  apparent problem w/ gage probing (0,0,0) in a cell-centered thickness-1 volume
  gageIv3Fill: padded size = (258,258,3);
      fd = 4; point (pad: 1) coord = (1,1,0) --> bidx = -66564
  
+ gage: consider changing gageProbe() to take position both in index and
+ unit world space, since many programs only care about unit world space
+ 
+ nrrd: generalize I/O so that magic needn't be on line by itself
+ nrrd: allow nrrd header I/O to and from strings
+ nrrd: add support for VFF file format
+ 
+ fix "gkms pvg": try to reproduce problem with mouse data
+ 
+ qbert: downsmpl x+y, upsmplpad on Z error about unequal centers
+ 
+ qbert on cygwin: running out of memory w/out error
+ 
+ tend epireg: figure out how to do fitting without HST estimation
+ 
+ mite big changes -----------------
+ - do precomputation of opacity volume when required for tensor shading
+ 
+ gage changes into bane:
+ teem\src\bane\hvol.c(167) : warning C4700: local variable 'hist' used
+   without having been initialized
+ - try gkms hvol with three explicit ranges
+ - remove excess NULL pointer checks between answer and answer wrapper
+ - valgrind
+ 
+ 
+ 
+ finish big changes
+ - ADD gkms back into teem bins!
+ 
+ teem: fix bugs in teem makefile stuff: 
+ - HUGE PROBLEM: make a change in nrrdEnums.h, which unrrdu/project.c 
+   uses directly. recompile, and nrrd gets compiled, but not unrrdu,
+   so unu doesn't get updated correctly!
+ - want seperate directories for static and shared libraries
+ - want bin/dev and bin/install targets
+ 
+ ell: debug SVD of things based on negative eigenvalues
+  - add flag to say: always positive sv's, or always right-handed rotations
+ 
+ leaf: do it
+ 
+ DESTROY the airType* enum! I wasted quite awhile debugging a problem caused by:
+   if (nrrdAlloc(nout, airTypeFloat, 3, size[0], size[1], size[2])) { ...
+ Do you see the problem?  Grrr.
+ 
+ PLEASE figure out why I can't say
+ 
+    -t "unsigned char"
+ 
+ to unu make, unu convert and the like.
+ Does it have to do with airStrtokQuoting?
+ Why not? I hate this crap.
+ 
+ debug rendering of ML with windowed sinc
+ 
+ hest: add { } commenting
+ 
+ nrrd: have to add more internal types to stuff in arith.c for these:
+ new nrrdBinaryOps: bit-wise and (&), or (|), xor (^)
+ new nrrdUnaryOps: bit-wise not (^), expm1
+ 
+ 
+ nrrd: It would be good if per-axis field specifications failed (or at
+ least warned) if there are more fields than there should be
+ 
+ SEGFAULT:  in muse/usr/sci/data/Medical/cat-array/bisti/rend
+ gkms hvol -s a:-1200,6000 a:0,3100 a:-1000,1000 -i CFC.nrrd -o CFC-hvol.nrrd 
+ 
+ nrrd: speed up nrrdCCFind
+ 
+ bane: finish updating tutorial
+ 
+ nrrd: nrrdKernel*Parse should allocate the thing and return it, instead of
+ returning an int error code 
+ 
+ dye: see if dyeColorParse should allocate the thing and return it
+ 
+ FAQ on teem coding standards
+ Banks's policy.txt:
+  - documenting cross-code assumptions and dependencies
+ 
+ image registration tool for small translational errors
+ 
  air: make floating point stuff more like C++: lots of per-arch #defines
  
***************
*** 13,35 ****
  bin/emap: allow generating envmaps useful for specular highlights
  
! mite: add diffuse and specular envmape
! 
! gage: consider changing gageProbe() to take position both in index and
! unit world space, since many programs only care about unit world space
  
  bin: create "segprobe" analog to vprobe and pprobe
  
- todo: making volume datasets
- todo: nhdrs for volvis.org
- 
  todo: figure out shared libraries on cygwin.
  todo: Test that shared libraries work everywhere they should.
  
- DTInspect:
-  - add plane of glyphs
-  - fix normals on isosurface
- 
- leaf: do it
- 
  limn: make it smarter- so that joining parts together is possible in a
  way that facilitates transformations and correct drawing.  This really
--- 99,109 ----
  bin/emap: allow generating envmaps useful for specular highlights
  
! mite: add diffuse and specular envmap
  
  bin: create "segprobe" analog to vprobe and pprobe
  
  todo: figure out shared libraries on cygwin.
  todo: Test that shared libraries work everywhere they should.
  
  limn: make it smarter- so that joining parts together is possible in a
  way that facilitates transformations and correct drawing.  This really
***************
*** 43,48 ****
  unrrdu: standardize hest framework for doing unu/gkms/tend style programs
  
- mrender: deal with vectors
- 
  air: make airOneLine return number of bytes read; current return
    of string length is entirely redundant with return of strlen()
--- 117,120 ----
***************
*** 55,56 ****
--- 127,138 ----
  air:  think about implementing a fabs() and dabs() with bitmasking
  
+ nrrd: figure out some framework for lazy evaluation stuff
+ 
+ write a paper about nrrd!
+ include a list of published papers using teem:
+ Kindlmann: Superquadric Tensor Glyphs
+ Kindlmann Vis03: Curvature-Based Transfer Functions
+ Lefohn Vis03: Interactive Deformation and Visualization of Level Set Surfaces Using Graphics Hardware
+ Kniss VisSym04: Medical Applications of Multi-field Volume Rendering and VR Techniques
+ Deschamps TVCG04: Fast Evolution of Image Manifolds and Application to Filtering and Segmentation in 3D Medical Images
+ ikits Vis03: A Constraint-based Technique for Haptic Volume Exploration

Index: README.txt
===================================================================
RCS file: /cvsroot/teem/teemdoc/html/tree/src/README.txt,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** README.txt	12 Sep 2003 14:32:49 -0000	1.2
--- README.txt	7 Mar 2005 18:51:17 -0000	1.3
***************
*** 1,4 ****
!   teem: Gordon Kindlmann's research software
!   Copyright (C) 2003, 2002, 2001, 2000, 1999, 1998 University of Utah
  
    This library is free software; you can redistribute it and/or
--- 1,5 ----
!   Teem: Gordon Kindlmann's research software
!   Copyright (C) 2005  Gordon Kindlmann
!   Copyright (C) 2004, 2003, 2002, 2001, 2000, 1999, 1998  University of Utah
  
    This library is free software; you can redistribute it and/or
***************
*** 30,36 ****
  hest:   command-line parsing
  biff:   general error reporting utility
! nrrd:	nearly raw raster data
  ell:    assorted linear algebra stuff
! unrrdu:	"unu": powerful command-line interface to nrrd
  dye:    color conversions (and eventually color maps)
  gage:   for measuring things in volumes (currently only scalar volumes)
--- 31,37 ----
  hest:   command-line parsing
  biff:   general error reporting utility
! nrrd:   nearly raw raster data
  ell:    assorted linear algebra stuff
! unrrdu: "unu": powerful command-line interface to nrrd
  dye:    color conversions (and eventually color maps)
  gage:   for measuring things in volumes (currently only scalar volumes)