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Re: [Taverna-users] pathways
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From: Paul F. <pau...@po...> - 2009-02-26 15:37:58
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Ah, I can't access it from here. Paul. Kieren Lythgow wrote: > Ah I see, this is due to Newcastle's MSc e-science timetable: https://internal.cs.ncl.ac.uk/modules/2008-09/csc8308/ > > Kieren > ________________________________________ > From: Paul Fisher [pau...@po...] > Sent: 26 February 2009 14:39 > To: tav...@li... > Subject: Re: [Taverna-users] pathways > > Hi, > > I will shortly update the worklfow to reflect the changes to the Kegg > output (since this has changed) - as noted in the comments section. > > Thank you for the Dr. comment, Kieren. Unfortunately, I am still a PhD > student - all be it in my 4th year. Nearly there though :) > > Paul. > > Kieren Lythgow wrote: > >> Hi Rinku, >> >> The genbank input requires "ncbi-geneid:" before the actual id. Dr Paul Fisher has developed one I think you may well be interested in using: http://www.myexperiment.org/workflows/15 >> >> Thanks >> >> Kieren Lythgow >> PhD student >> Mitochondrial Research Group >> Institute of Ageing & Health >> Newcastle University >> UK >> ________________________________________ >> From: Rinku Saha [rin...@re...] >> Sent: 25 February 2009 21:50 >> To: tav...@li... >> Subject: [Taverna-users] pathways >> >> Hi >> Iam trying to create this workflow where: >> a)the input will be a identifier(currently it is gen bank acc number) and >> b)output will be pathways associated with the accession number. >> >> When I give a input for a gene accession number it fails eg:L78833 >> Would you please suggest what is wrong.I am very new to taverna and trying to know more of it by creating workflows. >> Thanks a lot in advance >> Thanks >> Rinku >> >> >> >> >> >> >> [http://imadworks.rediff.com/cgi-bin/AdWorks/adimage.cgi/2705639_2677138/creative_2680797.gif]<http://adworks.rediff.com/cgi-bin/AdWorks/click.cgi/www.rediff.com/signature-home.htm/1050715198@Middle5/2705639_2677138/2680797/1?PARTNER=3&OAS_QUERY=null> >> >> ------------------------------------------------------------------------------ >> Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA >> -OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise >> -Strategies to boost innovation and cut costs with open source participation >> -Receive a $600 discount off the registration fee with the source code: SFAD >> http://p.sf.net/sfu/XcvMzF8H >> _______________________________________________ >> taverna-users mailing list >> tav...@li... >> https://lists.sourceforge.net/lists/listinfo/taverna-users >> Documentation: http://www.mygrid.org.uk/usermanual1.7/ >> FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq >> Biological Services: http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices >> >> > > > ------------------------------------------------------------------------------ > Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA > -OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise > -Strategies to boost innovation and cut costs with open source participation > -Receive a $600 discount off the registration fee with the source code: SFAD > http://p.sf.net/sfu/XcvMzF8H > _______________________________________________ > taverna-users mailing list > tav...@li... > https://lists.sourceforge.net/lists/listinfo/taverna-users > Documentation: http://www.mygrid.org.uk/usermanual1.7/ > FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq > Biological Services: http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices > > ------------------------------------------------------------------------------ > Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA > -OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise > -Strategies to boost innovation and cut costs with open source participation > -Receive a $600 discount off the registration fee with the source code: SFAD > http://p.sf.net/sfu/XcvMzF8H > _______________________________________________ > taverna-users mailing list > tav...@li... > https://lists.sourceforge.net/lists/listinfo/taverna-users > Documentation: http://www.mygrid.org.uk/usermanual1.7/ > FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq > Biological Services: http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices > |
