Re: [Taverna-hackers] Extract specific ID

[Katy W. <kat...@ma...>]

To begin with, you probably want to look at adding a BioMart service to 
your workflow. You can query a particular organism with a GO term for 
"DNA binding" and get a list of IDs as a result.

Katy


Stian Soiland-Reyes wrote:
> On Fri, Dec 5, 2008 at 15:47, Massimiliano Armento
> <mas...@is...> wrote:
>
>   
>> This is my objective: i need to extract from all the genes and
>> proteins of an organism only those with a particular definition
>> record in the DB like "DNA binding" in the form of the associated ID
>> (gi or other).
>>     
>
> Your task sounds like building a workflow.
>
> Have you checked www.myexperiment.org if there are any similar workflows?
>
>
> I also suggest asking (with more details) on the taverna-users lists
> for more help from bioinformaticians there, as this list is mainly for
> developers who work with Taverna's code, APIs or in other ways
> integrate Taverna as a software with other products.
>
>   


-- 
Dr Katy Wolstencroft
Research Fellow, School of Computer Science,1.17 Kilburn Building
University of Manchester, Oxford Road, Manchester, M13 9PL, UK
Tel: +44(0)161 2756276