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110 hapmap-fasta and hmc output Next_Release_(example) open 2014-04-28 2014-04-28 5  
109 TASSEL5 - Only add depth to input alignment if it contains it Next_Release_(example) open 2014-03-06 2014-03-06 5  
107 GBS DiscoverySNPCallerPlugin modifications Next_Release_(example) open Jeff Glaubitz 2013-10-21 2013-10-30 5  
104 more filters in gui Next_Release_(example) open Terry Casstevens 2013-04-12 2013-04-22 5  
101 SNP Caller Log Tags Next_Release_(example) open Jeff Glaubitz 2013-04-09 2013-04-09 5  
100 GBS Pipeline Run All Steps Next_Release_(example) open Terry Casstevens 2013-04-09 2013-04-09 5  
99 FilterAlignPlugin - Percent missing Next_Release_(example) open Terry Casstevens 2013-04-09 2013-04-09 5  
98 FilterAlignPlugin - random subset Next_Release_(example) open Terry Casstevens 2013-04-09 2014-05-26 5  
97 TagsToSNPByAlignment -mUpd optionally specify new TOPM Next_Release_(example) open Terry Casstevens 2013-03-08 2013-04-09 5  
96 TagsToSNPByAlignmentPlugin -- Specify Output Filename open Terry Casstevens 2013-01-08 2013-01-09 5  
95 RawReadsToHapMapPlugin Additional Features open Terry Casstevens 2013-01-08 2013-01-09 5  
94 ParseBarcodeRead accept new enzyme as parameter None open Terry Casstevens 2012-08-31 2013-01-03 5  
92 Locus names in LD plot None open Terry Casstevens 2012-07-27 2012-07-31 5  
91 PCA - monomorphic markers None open Terry Casstevens 2012-07-02 2012-07-31 5  
90 Check folders before GBS analysis None open Jeff Glaubitz 2012-05-17 2012-06-27 5  
89 Overwrite confirmation None open Terry Casstevens 2012-05-10 2012-06-25 5  
87 Merge file by sites None open Terry Casstevens 2012-03-10 2012-03-13 5  
84 Permutation Test - MLM None open Peter Bradbury 2011-07-26 2013-01-03 5  
83 fields strand, assembly#, center, protLSID, assayLSID, panel None open Terry Casstevens 2011-06-06 2013-01-03 5  
81 Filter out SNPs by position None open Terry Casstevens 2011-06-03 2011-06-04 5  
79 Search tool None open Terry Casstevens 2011-06-03 2011-06-04 5  
78 % on progressive bar None open Terry Casstevens 2011-04-16 2011-04-21 5  
76 multiple methods for GS None open Peter Bradbury 2011-03-01 2011-04-06 5  
74 Default for minimun count in site filter None open Ed Buckler 2010-11-18 2010-12-07 5  
66 heterozgyosity support None open Terry Casstevens 2010-09-22 2013-01-03 9  
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