TASSEL Activity
TASSEL is a bioinformatics software package
Brought to you by:
buckler4,
tcasstevens
Activity for TASSEL
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Terry Casstevens committed [4d1de3] on Tassel3 Standalone
Added README.txt to scripts directory
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Terry Casstevens committed [18a122]
testing
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TASSEL released /Tassel 3.0/2016-03-03/tassel-3.0-src-20160303.zip
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Terry Casstevens committed [612a92]
Version 3.0.174 on March 3, 2016
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Terry Casstevens committed [r2592]
New Build Date
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Jeff Glaubitz committed [r2591]
Added restriction enzymes PstI-BfaI and SphI-EcoRI
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Added restriction enzymes PstI-BfaI and SphI-EcoRI
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Version 4.3.15 on July 30, 2015
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New Build Date
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Terry Casstevens committed [ac05ba]
Version 3.0.173 on July 30, 2015
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New Build Date
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Added 5 new enzyme pairs.
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Added 5 new enzyme pairs
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Version 4.3.14 on March 26, 2015
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Adding run_pipeline_non_verbose.pl and update_b...
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Updated script to help with automating builds f...
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New Build Date
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Terry Casstevens committed [73c488]
Version 3.0.172 on March 26, 2015
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Update run_pipeline_non_verbose.pl
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Adding files update_build_tassel3.pl and run_pi...
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New Build Date
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Added three new enzymes
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Added some new enzymes.
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Peter Bradbury committed [r2583]
changed residual rsq calculation for StepwiseMo...
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Version 4.3.13 on December 18, 2014
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TAS-609 New Build Date
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Version 3.0.171 on December 18, 2014
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New Build Date
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Added -e ignore option for unspecified restrict...
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Added -e ignore option for unspecified restrict...
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Merge branch 'master' of ssh://git.code.sf.net/...
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Added MslI. Fixed MspI common Y-adapters to ma...
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Added MslI. Fixed MspI common Y-adapters to ma...
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Fei Lu committed [r2579]
Genetic mapping code to generate anchors with r...
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Genetic mapping code to generate anchors with l...
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Version 4.3.12 on November 13, 2014
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Version 3.0.170 on November 13, 2014
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New Build Date
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New Build Date
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Fixed a typo in the usage statement
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Added some new restriction enzymes
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Added some new restriction enzymes
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Fix bug in GeneticMap that causes error when a ...
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Merge branch 'master' of ssh://pjbradbury@git.c...
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Updating documents on maizegenetics web site
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Updating documents on maizegenetics web site
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July 24, 2014 Update
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Version 4.3.11 on July 24, 2014
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Version 3.0.169 on July 24, 2014
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TAS-475 New Build Date
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New Build Date
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Added restriction enzyme KpnI
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Merge branch 'master' of ssh://git.code.sf.net/...
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Added new restriction enzyme KpnI
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June 26, 2014 Update
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Version 4.3.10 on June 26, 2014
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TAS-434 New Build Date
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Version 3.0.168 on June 26, 2014
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TAS-434 New Build Date
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added options to NamGwas to not resample and to...
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Merge branch 'master' of ssh://pjbradbury@git.c...
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Added restriction enzyme NspI
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Merge branch 'master' of ssh://git.code.sf.net/...
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Added restriction enzyme NspI
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TAS-189 Handle negative values as double parame...
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TAS-189 Handle negative values as double parame...
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Merge branch 'master' of ssh://git.code.sf.net/...
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Changed key file checking so that the minimal d...
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June 5, 2014 Update
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Version 4.3.9 on June 5, 2014
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TAS-414 New Build Date
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Version 3.0.167 on June 5, 2014
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Updated Build Date
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Added restriction enzymes NlaIII and SphI
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Added restriction enzymes NlaIII and SphI
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Merge branch 'master' of ssh://git.code.sf.net/...
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Added Tassel Pan-genome Atlas Pipeline document...
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Fixed #### to ## in vcf output
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Done Tassel 5
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Desktop Icon
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Peter did this
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Create Cladogram
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Done in Tassel 5
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Add “set heterozygotes to missing” and a percent hets filter
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Jason wrote this in Tassel 5
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FilterAlignPlugin - random subset
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UNEAK Pipeline integrated w/ GBS Pipeline
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Done in Tassel 5
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chromosome order in manhattan plot
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Fixed in Tassel 5
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Inputation only works for Pack1Alignment
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Fixed in Tassel 5
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Fixed in Tassel 5
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Simplify pal.datatype package
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Imputation DIalog Blocks Cancel Button
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setRareMultiAllelicStates returning SimpleAlignment
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Fixed in latest version
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Done in Tassel 5
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Make IdGroup immutable
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