Added README.txt to scripts directory
testing
Version 3.0.174 on March 3, 2016
New Build Date
Added restriction enzymes PstI-BfaI and SphI-EcoRI
Added restriction enzymes PstI-BfaI and SphI-EcoRI
Version 4.3.15 on July 30, 2015
New Build Date
Version 3.0.173 on July 30, 2015
New Build Date
Added 5 new enzyme pairs.
Added 5 new enzyme pairs
Version 4.3.14 on March 26, 2015
Adding run_pipeline_non_verbose.pl and update_b...
Updated script to help with automating builds f...
New Build Date
Version 3.0.172 on March 26, 2015
Update run_pipeline_non_verbose.pl
Adding files update_build_tassel3.pl and run_pi...
New Build Date
Added three new enzymes
Added some new enzymes.
changed residual rsq calculation for StepwiseMo...
Version 4.3.13 on December 18, 2014
TAS-609 New Build Date
Version 3.0.171 on December 18, 2014
New Build Date
Added -e ignore option for unspecified restrict...
Added -e ignore option for unspecified restrict...
Merge branch 'master' of ssh://git.code.sf.net/...
Added MslI. Fixed MspI common Y-adapters to ma...
Added MslI. Fixed MspI common Y-adapters to ma...
Genetic mapping code to generate anchors with r...
Genetic mapping code to generate anchors with l...
Version 4.3.12 on November 13, 2014
Version 3.0.170 on November 13, 2014
New Build Date
New Build Date
Fixed a typo in the usage statement
Added some new restriction enzymes
Added some new restriction enzymes
Fix bug in GeneticMap that causes error when a ...
Merge branch 'master' of ssh://pjbradbury@git.c...
Updating documents on maizegenetics web site
Updating documents on maizegenetics web site
July 24, 2014 Update
Version 4.3.11 on July 24, 2014
Version 3.0.169 on July 24, 2014
TAS-475 New Build Date
New Build Date
Added restriction enzyme KpnI
Merge branch 'master' of ssh://git.code.sf.net/...
Added new restriction enzyme KpnI
June 26, 2014 Update
Version 4.3.10 on June 26, 2014
TAS-434 New Build Date
Version 3.0.168 on June 26, 2014
TAS-434 New Build Date
added options to NamGwas to not resample and to...
Merge branch 'master' of ssh://pjbradbury@git.c...
Added restriction enzyme NspI
Merge branch 'master' of ssh://git.code.sf.net/...
Added restriction enzyme NspI
TAS-189 Handle negative values as double parame...
TAS-189 Handle negative values as double parame...
Merge branch 'master' of ssh://git.code.sf.net/...
Changed key file checking so that the minimal d...
June 5, 2014 Update
Version 4.3.9 on June 5, 2014
TAS-414 New Build Date
Version 3.0.167 on June 5, 2014
Updated Build Date
Added restriction enzymes NlaIII and SphI
Added restriction enzymes NlaIII and SphI
Merge branch 'master' of ssh://git.code.sf.net/...
Added Tassel Pan-genome Atlas Pipeline document...
Fixed #### to ## in vcf output
Done Tassel 5
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Peter did this
Create Cladogram
Done in Tassel 5
Add “set heterozygotes to missing” and a percent hets filter
Jason wrote this in Tassel 5
FilterAlignPlugin - random subset
UNEAK Pipeline integrated w/ GBS Pipeline
Done in Tassel 5
chromosome order in manhattan plot
Fixed in Tassel 5
Inputation only works for Pack1Alignment
Fixed in Tassel 5
Fixed in Tassel 5
Simplify pal.datatype package
Imputation DIalog Blocks Cancel Button
setRareMultiAllelicStates returning SimpleAlignment
Fixed in latest version
Done in Tassel 5
Make IdGroup immutable