SW# (swsharp) is a library for sequence alignment based on CUDA enabled GPUs. It utilizes Hirschbergs and Ukkonens algorithm for memory efficiency and additional speed up. The library is scalable for use with multiple GPUs. Some parts of the library utilize MPI for CUDA enabled clusters.

This work has been supported in part by Croatian Science Foundation under the project UIP-11-2013-7353.


Database search now available!

Publications:
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0145857
http://bioinformatics.oxfordjournals.org/content/29/19/2494
http://nar.oxfordjournals.org/content/early/2013/11/23/nar.gkt1164.abstract#!

Related work:
http://exolocator.bii.a-star.edu.sg/

NEW:
SW# web edition:
http://swsharp.zesoi.fer.hr/

Project Activity

See All Activity >

Follow SW#

SW# Web Site

Other Useful Business Software
Build Data Resilience - Take the Assessment Today Icon
Build Data Resilience - Take the Assessment Today

Can you recover when it matters most? Take this quick assessment to identify gaps and build greater recovery confidence.

Is your recovery strategy as strong as you think? Take this quick self-assessment to check your recovery readiness and gain tailored insights. In only 2 minutes, you'll learn where you fall on the recovery readiness scale.
Take the Assessment
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of SW#!

Additional Project Details

Registered

2013-03-09
Report inappropriate content