Makefile Help

[ankit223]

Please advise on compiling the project as I am getting errors like following:
g++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE     -I. -I/home/apatel04/Desktop/RAMP -I. -I/home/apatel04/Desktop/gsl-1.8 -Wno-deprecated -c ./ InOut.cpp
libraResults.hpp:55: error: extra qualification ‘intensityAnalysis::’ on member ‘printIntensityAnalysis’
libraResults.hpp:114: error: extra qualification ‘seriesAnalysis::’ on member ‘printSeriesAnalysis’
libraResults.hpp: In copy constructor ‘seriesAnalysis::seriesAnalysis(const seriesAnalysis&)’:
libraResults.hpp:76: error: ‘assert’ was not declared in this scope
libraResults.hpp: In member function ‘seriesAnalysis& seriesAnalysis::operator=(const seriesAnalysis&)’:
libraResults.hpp:90: error: ‘assert’ was not declared in this scope
libraResults.hpp: At global scope:
libraResults.hpp:261: error: extra qualification ‘candidateAnalysis::’ on member ‘setCandidateDescription’
libraResults.hpp:303: error: extra qualification ‘candidateAnalysis::’ on member ‘setCandidateSeq’
libraResults.hpp:318: error: extra qualification ‘candidateAnalysis::’ on member ‘setCandidateMass’
libraResults.hpp:323: error: extra qualification ‘candidateAnalysis::’ on member ‘reset’
libraResults.hpp:423: error: extra qualification ‘scanAnalysis::’ on member ‘printScanAnalysis’
libraResults.hpp:424: error: extra qualification ‘scanAnalysis::’ on member ‘scanAnalysisToFile’
InOut.hpp:51: error: extra qualification ‘InOut::’ on member ‘getConditionsFromStdIn’
InOut.hpp:52: error: extra qualification ‘InOut::’ on member ‘getConditionsFromFile’
InOut.hpp:53: error: extra qualification ‘InOut::’ on member ‘openOutFile’
InOut.hpp:54: error: extra qualification ‘InOut::’ on member ‘closeOutput’
InOut.hpp:55: error: extra qualification ‘InOut::’ on member ‘printSumoXML’
InOut.hpp:56: error: extra qualification ‘InOut::’ on member ‘escape’
InOut.hpp:60: error: extra qualification ‘InOut::’ on member ‘getRequestedMsLevel’
InOut.hpp:64: error: extra qualification ‘InOut::’ on member ‘getUseIsotopicCorrection’
InOut.hpp:69: error: extra qualification ‘InOut::’ on member ‘getFragmentType’
InOut.hpp:74: error: extra qualification ‘InOut::’ on member ‘getCentroidingPref’
InOut.hpp:79: error: extra qualification ‘InOut::’ on member ‘getCentroidingIteration’
InOut.hpp:84: error: extra qualification ‘InOut::’ on member ‘getIsToNormalize’
InOut.hpp:89: error: extra qualification ‘InOut::’ on member ‘getNormalPosition’
InOut.hpp:94: error: extra qualification ‘InOut::’ on member ‘getTolerance’
InOut.hpp:99: error: extra qualification ‘InOut::’ on member ‘getDigestionTolerance’
InOut.hpp:104: error: extra qualification ‘InOut::’ on member ‘getModifiedResidue’
InOut.hpp:109: error: extra qualification ‘InOut::’ on member ‘getNotTerminal’
InOut.hpp:114: error: extra qualification ‘InOut::’ on member ‘getMass’
InOut.hpp:125: error: extra qualification ‘InOut::’ on member ‘getTargetMass’
InOut.hpp:130: error: extra qualification ‘InOut::’ on member ‘getMassIsotopes’
InOut.hpp:135: error: extra qualification ‘InOut::’ on member ‘setTargetMass’
InOut.hpp:272: error: extra qualification ‘InOut::’ on member ‘zeroFill’
InOut.hpp:275: error: extra qualification ‘InOut::’ on member ‘plotModCand’
make: *** [InOut.o] Error 1

I took code from CVS. I did everything according to suggestions(RAMPROOT, GSLROOT etc) but these errors seems coming all time and can not compile.

Thank You,
Ankit Patel

[Patrick Pedrioli]

Ankit,
   Thank you for your interest in the project.

I just checked in a new version in the CVS repository that should (I did not test it since this is a problem that only shows up with gcc versions newer than the one I am running) take care of the compilation problems you reported.

Could you please try to get the latest version from CVS and let me know if this time it works fine?

Cheers,

   Patrick

[ankit223]

Hello Patrick,
              Thank you for your reply. Actually we were very much tied in timelines so we just installed older version of gcc(3.4.6) and its working.
I appreciate your help if time permits than I may try new version from cvs next week.

Thank you,
Ankit