assuming one has a file "bla.caf" and does the following:
tg_index -C bla.caf
In gap5: File -> Export sequences -> as CAF
then all the reads in the resulting "bla.0.caf" file will have been renamed by appending a dot and then some (gap5 internal?) number. I'm not sure whether there's an intention behind the behaviour, but I filed it as "bug" as I think that this should not be. Export as SAM e.g. does not do that, while export as ACE does something else (appen ".f" and ".r")
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