Medical Physics Software

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Browse free open source Medical Physics software and projects below. Use the toggles on the left to filter open source Medical Physics software by OS, license, language, programming language, and project status.

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  • 1
    Iso2Mesh - A 3D Mesh Generation Toolbox

    Iso2Mesh - A 3D Mesh Generation Toolbox

    A 3D surface and volumetric mesh generator for MATLAB/Octave

    A simple yet powerful mesh generator based on MATLAB/GNU Octave language, creating finite-element mesh from surfaces or arbitrary 3D volumetric images (such as MRI/CT scans) with fully automatic workflows.
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    Downloads: 19 This Week
    Last Update:
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  • 2
    MRiLab

    MRiLab

    A Numerical MRI Simulation Platform

    The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time imaging technique. The main MRiLab simulation platform combined with those toolboxes can be applied to customize various virtual MR experiments which can serve as a prior stage for prototyping and testing new MR technique and application. If you find MRiLab useful for your work, please cite this paper: Fast Realistic MRI Simulations Based on Generalized Multi-Pool Exchange Tissue Model. IEEE Transactions on Medical Imaging. 2016. doi: 10.1109/TMI.2016.2620961
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    Downloads: 13 This Week
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  • 3
    KinetDS is a software for curve fitting particularly designed for kinetic (mechanistic and empirical) description of a substance dissolution from solid state. It was primarily designed for handling pharmaceutical dissolution tests
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    Downloads: 12 This Week
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  • 4
    SMILI

    SMILI

    Scientific Visualisation Made Easy

    The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with graphical user interfaces and/or via the command-line. See our YouTube channel for tutorial videos via the homepage. The applications are all built out of a uniform user-interface framework that provides a very high level (Qt) interface to powerful image processing and scientific visualisation algorithms from the Insight Toolkit (ITK) and Visualisation Toolkit (VTK). The framework allows one to build stand-alone medical imaging applications quickly and easily.
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    Downloads: 20 This Week
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  • 5
    NiftyRec
    This project, developed at UCL London, provides code for tomographic reconstruction. NiftyRec is written in C and has Python and Matlab extensions. Computationally intensive functions have a GPU accelerated version based on CUDA.
    Downloads: 5 This Week
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  • 6
    gVirtualXRay

    gVirtualXRay

    Virtual X-Ray Imaging Library on GPU

    gVirtualXRay is a C++ library to simulate X-ray imaging. It is based on the Beer-Lambert law to compute the absorption of light (i.e. photons) by 3D objects (here polygon meshes). It is implemented on the graphics processing unit (GPU) using the OpenGL Shading Language (GLSL). SimpleGVXR is a smaller library build on the top of gVirtualXRay. It provides wrappers to Python2, Python3, R, Ruby, Tcl, C#, Java, and GNU Octave.
    Downloads: 4 This Week
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  • 7

    plastimatch

    Volumetric image processing software

    Plastimatch is an open source software for image computation. Our main focus is high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET).
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    Downloads: 15 This Week
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  • 8
    PhysiCell

    PhysiCell

    physics-based multicellular simulator

    PhysiCell is a cross-platform C++ framework for large, physics-based multicellular simulations.
    Downloads: 6 This Week
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  • 9
    Nest-o-Patch

    Nest-o-Patch

    Software for analysis of patch-clamp recordings and other wave data

    This program was designed mainly for preconditioning and analysis of electrophysiological data, including patch-clamp and 2-electrode voltage clamp recordings. The program includes tools both for basic analysis of whole-cell recordings or analysis of single channel properties. Program can display and analyse long traces incuding many sweeps, series and even groups simultaneously. Current amplitudes or time intervals are easily measured. Single channel conductance, kinetics, NPo, as well as number of channels in a patch and their open probability may be estimated with the analysis of dwelling time at each conductance level. The program directly reads files, created by Pulse and PatchMaster software (HEKA Elektronik Dr. Schulze GmbH) as well as ASCII files. However, the program may be useful in various applications when editing and measurements in a 2-dimentional (for example time-current) wave are required.
    Downloads: 3 This Week
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  • 10

    beben - DICOM to STL

    builds a 3D model based on a contours from a DICOM RTStructures file

    Downloads: 5 This Week
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  • 11
    A cross-platform Java program to turn a simple Geiger counter into the equivalent of a state-of-the art digital model, plus some – using your laptop computer.
    Downloads: 2 This Week
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  • 12
    Evil Dicom (classic)
    The original C# .NET 4.0 DICOM library designed for rapid development of DICOM applications. the new library can be found at evildicom.rexcardan.com. The website has maintenance planned for 08.21.12 and will be down.
    Downloads: 1 This Week
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  • 13
    Gadgetron

    Gadgetron

    Medical Image Reconstruction Framework

    Medical Image Reconstruction Framework
    Downloads: 1 This Week
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  • 14

    Enhanced SAR Compression

    VOP Algorithm with improved speed and compression

    This work is described in: Orzada S, Fielder TM, Quick HH, Ladd ME, "A local SAR compression algorithm with improved compression, speed and flexibility", https://doi.org/10.1002/mrm.28739. This new algorithm is an iterative expansion of the exisisting local SAR compression algorithm for MRI proposed by Lee et al. ( https://doi.org/10.1002/mrm.23140) The number of VOPs is approximately halved with the new algorithm, while at the same time the compression time is reduced with speed-up factors of up to 2.5.
    Downloads: 2 This Week
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  • 15
    ExpSuite
    ExpSuite is a software framework for applications to perform psychoacoustical experiments. ExpSuite allows acoustic and electric stimulation for normal hearing and cochlear implant listeners, respectively.
    Downloads: 2 This Week
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  • 16
    Hyperfit

    Hyperfit

    Software for calibration of hyperelastic constitutive models

    This software allows to fit various hyperelastic constitutive models. Optimal set of parameters of a selected constitutive model can be identified. Many advanced setting, methods and corrections are available to get optimal results according to the user's preference.
    Downloads: 2 This Week
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  • 17
    IQM

    IQM

    Scientific Image and Signal Analysis in Java

    IQM has moved to GitHub
    Downloads: 2 This Week
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  • 18
    The Neurophysiological Biomarker Toolbox
    NBT is an open source Matlab toolbox for the computation and integration of neurophysiological biomarkers. NBT allows for easy implementation of new biomarkers, and incorporates an online wiki with extensive help and tutorials.
    Downloads: 2 This Week
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  • 19
    Manager of the International Classification of Diseases (ICD). Using MySQL database. The current version in Catalan (available in English and Spanish). In collaboration with CatSalut (Catalan Health Service) and TermCat (Catalan Terminology Service)
    Downloads: 1 This Week
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  • 20

    AnalyzeNNLS

    MRI Multiple Echo T2 Analysis

    Users load multiecho MRI data and draw ROIs. AnalyzeNNLS creates a T2 distribution from the averaged decay data. Regional fractions and geometric T2 times can be determined. Please reference: Bjarnason TA, Mitchell JR. JMR 206:200-4 (2010). Temporal Phase Correction included in version 2.5. If you use this functionality, please reference: Bjarnason TA, Laule C, Bluman J, Kozlowski P. JMR 232:22-31 (2013).
    Downloads: 1 This Week
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  • 21
    Biomecanica Computacional U-America
    Investigacion de diseño avanzado en biomecanica computacional con elementos finitos usando herramientas de software-libre.
    Downloads: 1 This Week
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  • 22

    DRAMMS

    A Deformable Medical Image Registration Toolbox

    DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse brain development, etc); -- Registration under missing correspondences (e.g., vascular lesions, tumors, histological cuts). DRAMMS runs in command line in UNIX/Mac OS, It accepts Nifti/ANALYZE/MetaImage image formats. It is fully-automatic --- takes two input images, and generates a registered image and (optionally) the deformation field. More information (installation, tutorial, manual, demonstration, FAQ, etc) can be found at http://www.rad.upenn.edu/sbia/software/dramms/ .
    Downloads: 1 This Week
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  • 23
    Ophthalmologic database program for the Diseases and Treatment of the Retina. Uses MySQL database management system. It represents diagram fundus and can organize easily and visually events resulting from clinical follow-up and helping research.
    Downloads: 1 This Week
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  • 24
    RTToolbox

    RTToolbox

    Library to support quantitative analysis of radiotherapy data

    Moved to: http://github.com/MIC-DKFZ/RTTB RTToolbox is a software library, developed at the DKFZ to support quantitative analysis of treatment outcome for radiotherapy. The RTToolbox was designed following object-oriented design principles and was implemented in the language C++. It supports the import of radiotherapy data (e.g. dose distributions and structure sets) from DICOM-RT format and other standard image processing formats by using a bridge to ITK. The RTToolbox supports the full range of radiotherapy evaluation. Tools such as DVH calculation, arithmetic operations on dose distributions and structure relationship analysis are provided as a basis for further calculations. Dose comparison indices such as Conformity Index (CI), Homogeneity Index (HI) and Conformation Number (CN), and biological models including TCP, NTCP, EUD and BED are determined from dose distributions and DVHs. The RTToolbox can be easily extended to support other data format, comparison indices and
    Downloads: 1 This Week
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  • 25
    SpectrumGUI can generate filtered spectra for various x-ray tubes and can display attenuation coefficients for various materials. It also computes exposure and beam quality for various tube settings.
    Downloads: 1 This Week
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Open Source Medical Physics Software Guide

Open source medical physics software is a type of software that can be used to support medical physicists in their work. It helps medical physicists analyze and interpret data, as well as help them develop treatments for various diseases. Open source software is developed and maintained by individuals or groups of people who have expertise in the field of medicine, with the goal of making it freely available to users across the world.

One advantage of open source medical physics software is that it can be highly customized to suit particular needs, allowing users to modify existing code or create their own from scratch. This is especially beneficial when faced with shortages in resources, since developers can easily tweak existing programs to suit specific requirements. Additionally, open source software gives users access to reference codes and algorithms which are normally inaccessible through closed-source solutions.

Another benefit of open source medical physics software is its ability to provide transparency and collaboration between different stakeholders involved in the development process. This allows for new ideas, insights, and collaboration among specialists from different fields leading to faster progress on important problems related to healthcare quality assurance. Additionally, this collaborative approach often leads to cost savings due to reduced duplication efforts while developing programs or applications related with medical physics topics (e.g., radiation protection).

Finally, many open source projects are hosted online where they are readily accessible and searchable by anyone with an internet connection; this makes it easier for research professionals worldwide who may be struggling with similar problems or issues related with treatment planning systems (TPS) design or safety protocols improvement initiatives – they can now consult or collaborate on these projects online without having travel far distances at significant costs.

In conclusion, open source medical physics software provides a wide range of advantages over traditional closed-source solutions: more customization options for specialized needs; access to reference codes and algorithms; enhanced transparency allowing for collaboration between experts; plus cost savings thanks to reduced labor expenses related with programming improvements during treatment planning development processes. Ultimately, such tools help improve healthcare standards around the world thanks their ability facilitate multi-disciplinary collaborations towards better patient outcomes.

Open Source Medical Physics Software Features

  • Simulation: Open source medical physics software offers the ability to simulate scenarios in order to give accurate predictions and analysis of the outcomes. This feature can be used to test different treatments or processes before they are implemented.
  • Treatment Planning: Open source medical physics software provides a suite of tools that allow users to plan out treatments for patients with accuracy and precision. These tools include dose rate calculation, beam shaping, dose optimization, and more.
  • Radiation Monitoring: The software allows users to monitor radiation levels within a facility or area in order to ensure safety standards are being met. It also helps detect any potential risks associated with overexposure and can prompt the user if levels become too high.
  • Image Processing: Open source medical physics software enables the processing of data from medical images such as CT scans, X-rays, MRI scans, PET scans and more into numerical values for analysis and interpretation by doctors.
  • Data Analysis: This feature allows users to analyze data quickly and accurately using techniques such as pattern recognition algorithms or Monte Carlo simulations. It can be used to gain insights into patient health information or treatments that have been given.
  • Patient Tracking: Medical physicists can use this feature to keep track of patient records including diagnosis information, treatment plans, radiation doses given and much more all in one place for ease of access when needed.

Types of Open Source Medical Physics Software

  • Clinical Dosimetry Software: This type of open source medical physics software provides various tools for clinical dosimetry, including dose calculation algorithms and dose distributions across treatment volumes. It also includes features such as 3D printing, export to DICOM, and the ability to import patient images directly into the software.
  • Simulation Software: This is a type of software used for simulating radiation treatments in order to optimize results before using them on actual patients. It can simulate different types of radiation delivery methods and doses and is an important tool for scientific research in medical physics.
  • Image Processing Software: This open source medical physics software is used for analyzing medical images from CT scans, MRI scans, PET scans, SPECT scans, etc. It can be used to identify abnormalities or changes in tissue structure or function by looking at differences between normal and abnormal areas on the image.
  • Data Analysis Software: These programs are designed specifically to analyze data obtained from experiments or clinical trials conducted in the field of medical physics. They offer specialized functions such as plotting graphs and fitting curves based on inputted data sets. They also allow users to customize analysis settings specific to their own needs.
  • Convenient Patient Monitoring Applications: These apps make it easier for healthcare providers and other personnel involved in patient care to monitor vital signs remotely via smartphone devices or web applications with real-time data streams from multiple sources such as sensors connected directly to a particular device or body part being monitored. The information gathered can be used not only by healthcare staff but also by researchers tracking outcomes over time within large population studies or epidemiological investigations related to medical diagnosis or therapy monitoring

Advantages of Open Source Medical Physics Software

  1. Cost Savings: Open source medical physics software is typically free to use, making it much more cost effective than traditional medical physics software. For example, rather than paying for a license or subscription fee upfront, one can simply download the open source version and use it immediately. This helps reduce operational and maintenance costs associated with acquiring and running proprietary medical physics software.
  2. Scalability: Many open source medical physics programs are highly scalable and customizable, allowing them to be configured in accordance with the specific needs of each project. This is especially useful when dealing with large scale projects that require specialized tools or settings not available through traditional proprietary packages. It also helps increase efficiency as users have more control over how their tasks are completed.
  3. Improved Accessibility: Because open source medical physics software is freely available online, anyone can access it regardless of geographic location or budget constraints. This makes it easier for clinicians to provide quality healthcare services even in remote areas where resources may be limited. Additionally, educational institutions are able to leverage the power of these programs without having to incur additional costs associated with expensive licenses.
  4. Increased Flexibility: Open source medical physics software provides users with greater flexibility compared to traditional closed-source applications due to its modular design architecture which allows for easy integration into existing systems and networks. This enables users to quickly modify a program’s parameters according to their individual requirements without too much hassle or disruption of workflow activities.
  5. Security & Reliability: Open Source Medical Physics Software is constantly improved by developers actively looking for vulnerabilities and fixes should they arise over time — ensuring its reliability while protecting valuable information stored within such programs from malicious hacking attempts. Additionally, users do not have worry about any security issues arising out of outdated versions since these solutions are updated regularly along with patches meant to improve performance optimization or fix reported bugs seen across different platforms or environments.

What Types of Users Use Open Source Medical Physics Software?

  • Researchers: These users typically utilize open source medical physics software to study and analyze whatever phenomena are of interest. They can use the data to write articles, conduct experiments, or gain insight into a given situation.
  • Practitioners: Practitioners often use open source software to make informed decisions on patient care. This could include dosage calculations, risk-benefit analyses, imaging techniques, and more.
  • Educators: These individuals may take advantage of the abundance of free resources provided by open source software to teach students in their field. They can include case studies and exercises that illustrate how the tools work in a meaningful way for those learning about medical physics.
  • Trainees/Residents/Fellows: Medical staff who are still in training often use open source software to practice their craft and build essential skills required for certification or licensure exams. It also allows them to explore different topics as they are learning them rather than relying solely on textbook knowledge.
  • Software Developers & Engineers: Open source medical physics software provides an opportunity for developers and engineers to collaborate with one another in creating new programs suited for specific tasks or situations that current systems cannot handle effectively enough. This can help speed up innovation within the field as well as improve existing solutions by increasing efficiency and accuracy.
  • Practicing Physicians & Clinicians: Doctors may utilize this type of software in order to quickly access important information regarding patients’ conditions when needed most such as dose calculations during emergencies or surgery planning prior to interventions. It can also be used for follow-ups after treatment has been administered in order assess outcomes from a variety of angles.

How Much Does Open Source Medical Physics Software Cost?

The cost of open source medical physics software varies greatly depending on the type and complexity of the software. Generally, it is possible to find free or open-source versions of medical physics software online. For example, many physics-related software libraries are available for free on GitHub, a popular online repository for open source code. Additionally, there are several options for purchasing premium versions of existing medical physics software solutions. These can range from relatively inexpensive packages designed to help analyze data in laboratories to enterprise solutions designed to manage clinical trial data and patient records in hospitals. Ultimately, the cost of any particular piece of medical physics software will depend on its scope and complexity, so it’s important to research all available options before committing to a purchase.

What Software Can Integrate With Open Source Medical Physics Software?

Open source medical physics software can integrate with a wide variety of types of software including, but not limited to, Electronic Health Record (EHR) systems, data visualization tools, image processing and analysis programs, survey or assessment platforms and statistical/data analysis programs. EHRs offer users the ability to store health records electronically and manage them from a single platform. Data visualization tools allow users to create interactive visualizations of their data for easily understanding trends or features. Image processing and analysis programs are used to process digital images for finding abnormalities or changes in physical structure over time. Survey or assessment platforms enable users to collect information about patient history, lifestyle habits or assessments related to an illness. Lastly, statistical/data analysis programs help medical physics teams analyze large amounts of data in order to make informed decisions regarding treatments.

Trends Related to Open Source Medical Physics Software

  1. Increased Availability of Open Source Software: In recent years, there has been an increasing trend in the availability of open source medical physics software. These tools are typically available for free and can be used by anyone with an internet connection. This makes them accessible to a wider range of individuals and organizations, including those in developing countries or those who may not have the financial resources to purchase proprietary software.
  2. Increased Use of Open Source Software: As more medical physics software becomes available for free, there has been a rise in its usage. This is due to the fact that open source software can often provide a more complete solution than proprietary software and can be used in different settings. Additionally, since the code is open, developers are able to make modifications and customize it to fit their needs. This flexibility has led to increased acceptance of open source software within the medical physics community.
  3. Enhanced Collaboration: By having access to open source code, medical physicists are able to collaborate more easily with each other. This allows for faster innovation and development of new technologies as ideas can be shared more quickly and easily. Additionally, this collaborative approach has enabled medical physicists to work together on projects that may have otherwise been too complex or costly for any one individual or organization to tackle alone.
  4. Improved Quality: Since open source software is free, it is often updated more frequently than proprietary software. This means that users have access to the latest features and bug fixes more quickly, leading to improved quality and reliability of their medical physics applications. Additionally, since multiple developers are often involved in developing open source code, it tends to be more robust than code developed by a single individual or corporation.

How To Get Started With Open Source Medical Physics Software

Getting started with open source medical physics software is a simple process, but there are a few steps to take before you get started.

  1. The first step is to find the right software for your needs. Many sources provide reviews and recommendations of applications, so it’s important to do some research and select the appropriate option for the task at hand. Additionally, many sites compile lists of top open source medical physics software tools or even have comparison tables between different options, which can be helpful when trying to decide what works best for your particular purpose.
  2. Next, you will need to download and install the chosen program onto your computer. Most open source programs are available as digital downloads from websites like SourceForge or GitHub. Depending on how tech-savvy you are, there may be more specific instructions that come along with downloading a particular program - such as executing command-line commands - so make sure you read all of the pertinent documentation before beginning installation in order to avoid any problems down the line.
  3. Once everything has been installed properly and tested, it’s time to start using the software. Many open source projects provide extensive online resources such as tutorials and guides; these can be very helpful when getting used to working with new programs. It’s also beneficial (and occasionally necessary) to familiarize yourself with any third-party libraries or plug-ins that might be required for certain tasks within your chosen application - if this is applicable in your situation then make sure you spend some time getting acquainted with them prior to starting work on specific projects.
  4. Finally, it’s important not only use these tools efficiently but also safely: always remember that data security should never be taken lightly when dealing with sensitive information like medical records. After making sure that all safety protocols have been followed properly, then you can start using open source medical physics software confidently and successfully.