Re: [SO-devel] New term suggestion

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Uh oh. What about the rearranged chromosomes in the ciliate macronucleus?

Lincoln

On Tuesday 21 February 2006 10:01, Pankaj Jaiswal wrote:
> Instead of 'chloroplast chromosome', call it 'plastid chromosome'.
>
> Having mitochondrial chromosome does make sense. Also consider adding,
> 'mitochondrial plasmid', these are extra chromosomal linear/circular
> forms of DNA found in mitos. However here is a problem, e.g. in maize
> out many types of cytoplasm, the one that gives cytoplasmic male
> sterility has part of the mitochondrial genome exists as plasmid, where
> as the one that gives fertile cytoplasm has this fragment integrated in
> the chromosome. How is SO going to distinguish between the two.
>
> In maize there is a big master circle (main chromosome) of the mito
> chromosome, but there are also small sub circles derived from the master
> chromosome. Is there a way to handle this.
>
> -Pankaj
>
> Michael Ashburner (Genetics) wrote:
> > David
> >
> > I think the term 'mitochondrial chromosome' could well be added
> > and, for completion also 'chloroplast chromosome', as types of
> > chromosome.
> >
> > Karen: What do you think ?
> >
> > Michael
> >
> >
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> > <http://sourceforge.net/mailarchive/forum.php?forum=song-devel> Date:
> > Tue, 21 Feb 2006 08:05:04 -0500
> >
> > Hi Michael,
> >
> >>> genome has been suggested as a new term.
> >>> I am wary of this because a genome is for the most part discontinuous,
> >>> and stitching it up to make a region of continuous sequence would be
> >>> somewhat arbitrary.
> >>>
> >>> Anyone else have an opinion?
> >
> > Just curious...  What about mitochondrial genomes?
> > We're using "chromosome" in chado for the Dmel mitochondrial genome...
> >
> > Best,
> >
> > -Dave
> >
> > On Tue, 21 Feb 2006 6:33, Michael Ashburner (Genetics) wrote:
> >>I agree it has no place.
> >>
> >>M
> >>
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> >>> Date: Thu, 16 Feb 2006 16:25:03 -0700
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> >>>
> >>> genome has been suggested as a new term.
> >>> I am wary of this because a genome is for the most part discontinuous,
> >>> and stitching it up to make a region of continuous sequence would be
> >>> somewhat arbitrary.
> >>>
> >>> Anyone else have an opinion?
> >>> --Karen
> >>>
> >>> Initial Comment:
> >>> Suggestion: How about a term "genome" ?
> >>>
> >>> It itself is used within other term names, their definitions, and
> >>>even a
> >>> relationship (genome_of).   Primarily, I was simply hoping to reason
> >>> that a
> >>> chromosome was part_of a genome, but presumably this term would be
> >>> wide-reaching (many possible "parts")...
> >>>
> >>> Possible defs:
> >>> http://www.google.com/search?oi=defmore&defl=en&q=define:Genome
> >>>
> >>>
> >>>
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