Re: [SO-devel] New SO things

[Karen E. <ei...@fr...>]

Hi Simon,
Will fix the dbxref.

I did think about making a separate page for each term, and discussed  
this with CJM, but we decided that having lots (thousands) of files in  
a directory is a bad idea.
Once all of the terms load, linking via the anchors is very fast.

Glad it was useful.

Cheers,
K

On Feb 20, 2006, at 10:33 AM, Twigger Simon wrote:

> Hi Karen,
>
> I was looking at the browser and noticed that the dbxref you have for  
> QTL points to the chinese mirror site for RGD (DBxref:external  
> reference [http://rgd.cbi.pku.edu.cn/tu/qtls/]) - it would be better  
> to use the main RGD URL as this is more stable:  
> http://rgd.mcw.edu/tu/qtls/
>
> With the Miso browser, is it possible to have the window on the right  
> just display the term that is selected on the left, rather than having  
> a long list of every term and then jumping around based on internal  
> anchors? This would be a little more effort to code but then the  
> loading of the right hand frame would be very fast as it would only  
> have one entry at a time, rather than having to wait for ages for the  
> whole list to load. I think this might be a more scalable solution, as  
> more terms get added the download time for the whole list is going to  
> get a little prohibitive.
>
> Just some thoughts, having the web based browser is very convenient,  
> thanks for putting it up there :)
>
> Simon.
>
> --
>
> Simon N. Twigger, Ph.D.
> Assistant Professor, Department of Physiology
> Medical College of Wisconsin
> 8701 Watertown Plank Road,
> Milwaukee, WI, USA
> tel: 414-456-8802
> fax: 414-456-6595
> AIM/iChat: simontatmcw
>
>
> On Feb 16, 2006, at 5:24 PM, Karen Eilbeck wrote:
>
>> Hi all,
>>
>> Some new things about SO.
>>
>> SO release
>> I have made a file release of SO. You can find it here:
>> http://sourceforge.net/project/showfiles.php? 
>> group_id=72703&package_id=179383
>> I am going to start saving my edits in the CVS using obo format 1_2:
>> http://www.godatabase.org/dev/doc/obo_format_spec.html
>>
>> This is because I need the added expressiveness to capture the  
>> cross-product terms being incorporated in to SO. If you don't want to  
>> use the bleeding edge CVS files, please use the release system.
>>
>> Term Tracker
>> I have made a term tracker for people to use to make suggestions  
>> about terms. Someone found it before I announced it and has already  
>> requested a new term. More about that later.
>> http://sourceforge.net/tracker/?group_id=72703&atid=810408
>>
>> SO Browser
>> I have created a prototype browser called miSO to view SO terms  
>> online.
>> This is very new (a day old) so its not very mature, but maybe useful  
>> to people who do not use OBO-edit.
>> http://song.sourceforge.net/SO_view/index.html
>>
>> Cheers,
>> Karen
>>
>>
>>
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Karen Eilbeck
Research Assistant Professor
Department of Human Genetics
University of Utah
15 No. 2030 E.
SLC UT 84112