Re: [SO-devel] GFF3 Specification

[Joachim B. <joa...@gm...>]

Hello,

On 2013-02-26, at 5:24 PM, Anja Thormann <an...@eb...> wrote:
> It is not intended to split a chromosome further and if there is a GVF file where this is the case please let me know.
  I noticed it for this file: ftp://ftp.ensembl.org/pub/release-70/variation/gvf/homo_sapiens/Homo_sapiens_somatic.gvf.gz

  It contains the following duplication of the Y chromosome:

##sequence-region Y 1 10000
##sequence-region Y 2649521 59034049

> 2) I will revise data where we have "Variant_seq=INSERTION" or "Variant_seq=(11 BP INSERTION)" for the next release.
> The specification is clear in how the the Variant_seq attribute should be formatted.
  Thank you.

Best,
Joachim