SOAPstreaming-Streaming

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This hadoop streaming jar can recognize plain text intput in fa or fq format and convert a logical unit to a single line for later hadoop streaming application.
All the java codes are in src folder, they can be compiled and added to a jar by using update-jar.sh in tools folder. After running update-jar.sh, there will be a streaming.jar in tools folder.
These classes are complied and added to original hadoop streaming jar:
contrib/streaming/hadoop-0.20.2-streaming.jar.
User can use this new jar instead of original jar.

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Readme

Source code