What's next of SOAPdenovo2:
MEGAHIT is the formal successor of SOAPdenovo2
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
http://www.ncbi.nlm.nih.gov/pubmed/25609793
https://github.com/voutcn/megahit

Latest Code on GitHub:
https://github.com/aquaskyline/SOAPdenovo2

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. SOAPdenovo2 is the successor of SOAPdenovo. Cite the paper published in GigaScience (see website below) if you want to cite SOAPdenovo2.

Project Activity

See All Activity >

Categories

Assemblers

License

GNU General Public License version 3.0 (GPLv3)

Follow SOAPdenovo2

SOAPdenovo2 Web Site

You Might Also Like
Create state-of-the-art conversational agents with Google AI Icon
Create state-of-the-art conversational agents with Google AI

Using Dialogflow, you can provide new and engaging ways for users to interact with your product.

Dialogflow can analyze multiple types of input from your customers, including text or audio inputs (like from a phone or voice recording). It can also respond to your customers in a couple of ways, either through text or with synthetic speech. Dialogflow CX and ES provide virtual agent services for chatbots and contact centers. If you have a contact center that employs human agents, you can use Agent Assist to help your human agents. Agent Assist provides real-time suggestions for human agents while they are in conversations with end-user customers.
Try it free
Rate This Project
Login To Rate This Project

User Ratings

5.0 out of 5 stars
★★★★★
★★★★
★★★
★★
★
1
0
0
0
0
ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

User Reviews

Filter Reviews:
All
  • tfileme Posted 2013-05-20
    Soapdenovo2 works perfectly.
    1 user found this review helpful.
Read more reviews >

Additional Project Details

Operating Systems

Linux, BSD

Intended Audience

Science/Research, Developers

User Interface

Command-line

Programming Language

C++, C

Database Environment

Flat-file

Related Categories

C++ Assemblers, C Assemblers

Registered

2012-08-01
Report inappropriate content