What's next of SOAPdenovo2:
MEGAHIT is the formal successor of SOAPdenovo2
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
http://www.ncbi.nlm.nih.gov/pubmed/25609793
https://github.com/voutcn/megahit

Latest Code on GitHub:
https://github.com/aquaskyline/SOAPdenovo2

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. SOAPdenovo2 is the successor of SOAPdenovo. Cite the paper published in GigaScience (see website below) if you want to cite SOAPdenovo2.

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Categories

Assemblers

License

GNU General Public License version 3.0 (GPLv3)

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  • tfileme Posted 2013-05-20
    Soapdenovo2 works perfectly.
    1 user found this review helpful.
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Additional Project Details

Operating Systems

Linux, BSD

Intended Audience

Science/Research, Developers

User Interface

Command-line

Programming Language

C++, C

Database Environment

Flat-file

Related Categories

C++ Assemblers, C Assemblers

Registered

2012-08-01
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