File	Date	Author	Commit
samtools-0.1.16	2013-03-11	Jin Yu	[6cda4f] import SNPTools codes
tabix-0.2.5	2013-03-11	Jin Yu	[6cda4f] import SNPTools codes
bamodel.cpp	2013-03-11	Jin Yu	[f87122] bug fixs in EBD calculation and exome-lowpass i...
document.cpp	2013-03-11	Jin Yu	[6cda4f] import SNPTools codes
ebd.cpp	2013-03-11	Jin Yu	[6cda4f] import SNPTools codes
gender.txt	2013-03-11	Jin Yu	[6cda4f] import SNPTools codes
hapfuse.cpp	2013-03-11	Jin Yu	[6cda4f] import SNPTools codes
impute.cpp	2013-04-01	Jin Yu	[6aed38] fix a bug related to ti_query in impute.cpp
makefile	2013-12-30	Jin Yu	[2a48f9] tweak makefile to make it compatible to latest gcc
pileup.cpp	2013-03-11	Jin Yu	[f87122] bug fixs in EBD calculation and exome-lowpass i...
poprob.cpp	2013-03-11	Jin Yu	[6cda4f] import SNPTools codes
prob2vcf.cpp	2013-03-11	Jin Yu	[6cda4f] import SNPTools codes
probin.cpp	2013-03-11	Jin Yu	[6cda4f] import SNPTools codes
readme.txt	2013-03-11	Jin Yu	[f87122] bug fixs in EBD calculation and exome-lowpass i...
varisite.cpp	2013-03-11	Jin Yu	[f87122] bug fixs in EBD calculation and exome-lowpass i...

Read Me

Changelog:

* add a model [-p] in varisite to employ the data from multiply bams of the same sample jointly. 
* fixed a bug related converting phred-like mapping quality scores in pileup and bamodel 
* import SNPTools codes to sourceforge repository 

Usage:

Please refer SNPTools wiki for the best practice guide
https://sourceforge.net/p/snptools/wiki/Home/


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