snpEff / Discussion / General Discussion: database build error

I am getting this error with gff database:

$JAVA -jar snpEff.jar build -gff3 -v Corynespora
00:00:00 SnpEff version SnpEff 4.2 (build 2015-12-05), by Pablo Cingolani
00:00:00 Command: 'build'
00:00:00 Building database for 'Corynespora'
00:00:00 Reading configuration file 'snpEff.config'. Genome: 'Corynespora'
00:00:00 Reading config file: /home/sshrest1/bin/snpEff/snpEff.config
00:00:00 done
Reading GFF3 data file : '/home/sshrest1/bin/snpEff/./data/Corynespora/genes.gff'
java.lang.StackOverflowError
at java.lang.Character.toLowerCase(Character.java:6338)
at java.lang.Character.toLowerCase(Character.java:6309)
at java.lang.String.toLowerCase(String.java:2581)
at java.lang.String.toLowerCase(String.java:2670)
at ca.mcgill.mcb.pcingola.interval.GffMarker.hasAttr(GffMarker.java:207)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:135)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getGffParentId(GffMarker.java:148)
at ca.mcgill.mcb.pcingola.interval.GffMarker.getTranscriptId(GffMarker.java:190)

database build error

Forums

Help

database build error

database build error

Forums

Help

database build error document.SUBSCRIPTION_OPTIONS = { "thing": "topic", "subscribed": false, "url": "subscribe", "icon": { "css": "fa fa-envelope-o" } };

database build error