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From: Falk S. <fal...@gm...> - 2023-03-09 16:34:25
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Dear all, Registration is now open for HARMONY 2023! Date: 24-27 April 2023 Place: Seattle, WA, USA Meeting Website: https://co.mbine.org/events/ The Computational Modeling in Biology Network (COMBINE) is an initiative to coordinate the development of the various community standards and formats in systems biology, synthetic biology and related fields. HARMONY is a codefest-type meeting, with a focus on development of the standards, interoperability and infrastructure. There are generally not many general discussions or oral presentations during HARMONY; instead, the time is devoted to allowing hands-on hacking and interaction between people focused on practical development of software and standards. HARMONY 2023 is going to be organized primarily as an in-person event with individual breakout sessions responsible for enabling remote participation as needed. Most of each day will be scheduled by the communities as breakouts, with lightning talks scheduled on the first day. Posters will be displayed for the duration of the meeting. In addition, we will have some time each day for community discussion and wrap-ups of breakouts and advertisements for following breakouts. Important Dates: Breakout submission deadline: April 2, 2023 (for initial scheduling, and then ongoing) Lightning talk and poster submission deadline: April 2, 2023 Notification of acceptance of breakouts/talks/posters: April 7, 2023 More information and abstract submission is available https://co.mbine.org/events/. Kind regards COMBINE Coordinators |
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From: Michael H. <mh...@ca...> - 2012-10-19 02:12:09
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Hello COMBINE communities, The University of Connecticut Health Center (UCHC) has kindly agreed to host HARMONY 2013, and they would like everyone to help choose the best dates. Please fill out this short survey: http://www.surveymonkey.com/s/QNNV6NX The deadline for submitting replies is November 1, 2012. Thank you. MH -- Mike Hucka, Ph.D. -- mh...@ca... -- http://www.cds.caltech.edu/~mhucka Computing and Mathematical Sciences, California Institute of Technology, Pasadena, California, USA -- Twitter: @mhucka -- Skype: michaelhucka -- You can give me anonymous feedback via http://tinyurl.com/mhuckafeedback _______________________________________________ Combine-announce mailing list Com...@eb... http://listserver.ebi.ac.uk/mailman/listinfo/combine-announce |
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From: Nicolas Le N. <le...@eb...> - 2012-07-18 22:13:27
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Dear colleagues, COMBINE 2012 will start in less than a month. In order to put together an interesting and robust agenda, we need to know who is attending. Please, if you intend to attend the meeting (and I hope you do), register ASAP: http://co.mbine.org/events/COMBINE_2012 Best regards -- Nicolas LE NOVERE, Computational Systems Neurobiology, EMBL-EBI, WTGC, Hinxton CB101SD UK, Mob:+447833147074, Tel:+441223494521 Fax:468, le...@eb..., Skype:n.lenovere, twitter:@lenovere http://www.ebi.ac.uk/~lenov/, http://www.ebi.ac.uk/compneur/ _______________________________________________ Combine-announce mailing list Com...@eb... http://listserver.ebi.ac.uk/mailman/listinfo/combine-announce |
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From: Nicolas Le N. <le...@eb...> - 2012-06-29 18:35:17
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Dear Colleague, The Computational Modeling in Biology Network (COMBINE) is an initiative to coordinate the development of the various community standards and formats, initially in Systems Biology and related fields. The Annual COMBINE forum is a workshop-style event with oral presentations, posters and breakout sessions. The meeting provides an opportunity for those involved in many related standardization and software efforts in systems biology to meet and discuss their efforts, with the aim of working more closely together to ensure smooth interoperability between systems. http://co.mbine.org/events/COMBINE_2012 COMBINE 2012 will take place at The Donnelly Centre building at the University of Toronto from Wednesday August 15 to Sunday Aug. 19, 2012, immediately preceding the 13th International Conference on Systems Biology (http://icsb2012toronto.com/). The COMBINE conference location is a short walk from ICSB events and COMBINE 2012 is an official satellite meeting of ICSB, so you can follow the same travel and accommodation instructions for ICSB and use the same hotel discounts. Registration for COMBINE is $125 (Canadian) to cover costs associated with the meeting, including a workshop dinner and catering. We hope to see you there! -- Nicolas LE NOVERE, Computational Systems Neurobiology, EMBL-EBI, WTGC, Hinxton CB101SD UK, Mob:+447833147074, Tel:+441223494521 Fax:468, le...@eb..., Skype:n.lenovere, twitter:@lenovere http://www.ebi.ac.uk/~lenov/, http://www.ebi.ac.uk/compneur/ _______________________________________________ Combine-announce mailing list Com...@eb... http://listserver.ebi.ac.uk/mailman/listinfo/combine-announce |
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From: Michael H. <mh...@ca...> - 2012-06-20 22:12:26
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Standards-inclined systems biologists, Are you interested in hosting a future COMBINE or HARMONY meeting? Please let us know your interests as soon as possible by filling out the interest survey at http://www.surveymonkey.com/s/combine-harmony-hosting-interest We hope to settle the plans for 2013 in the next couple of weeks, so if you are interested, please let us know! The COMBINE coordinators Nicolas, Gary, Mike _______________________________________________ Combine-announce mailing list Com...@eb... http://listserver.ebi.ac.uk/mailman/listinfo/combine-announce |
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From: Nicolas Le N. <le...@eb...> - 2012-03-08 10:29:02
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***************************************************************************
Announcing
H A R M O N Y 2012
May 21-25, 2012
Maastricht, The Netherlands
http://co.mbine.org/events/HARMONY_2012
***************************************************************************
Dear Colleagues,
We are happy to announce that the registration for HARMONY 2012 is open now.
HARMONY is a hackathon-type meeting, with a focus on development of the
standards, interoperability and infrastructure. There is generally not many
general discussions or oral presentations during HARMONY; instead, the time
is devoted to allowing hands-on hacking and interaction between people
focused on practical development of software and standards. The HARMONY
2012 meeting will be hosted by the Department of Bioinformatics from
Maastricht University.
The maximum number of participants is 70. Please register using the
following form
http://harmony2012.eventbrite.com.
We are trying to get more funding to support the accommodation costs of the
participants. We have agreed to special room rates with the Apart Hotel
Randwyck and the NH hotel. The participants have to book the hotel rooms
themselves. For further information please have a look at
http://co.mbine.org/events/HARMONY_2012#Accommodation.
The conference dinner will take place on the evening of Wednesday 23rd May
at Ipanema. On the first meeting day (Monday 21st May) there will be an
open symposium with tutorials, talks and a reception/poster session in the
evening.
A full schedule and further information will be provided on the meeting
website
www.co.mbine.org/events/HARMONY_2012
We are looking forward to welcome you all in Maastricht.
For any further questions, please contact us
(har...@ma...).
Best Regards,
Martina, Chris, Gary, Nicolas, Mike
_______________________________________________
Combine-announce mailing list
Com...@eb...
http://listserver.ebi.ac.uk/mailman/listinfo/combine-announce
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From: Michael H. <mh...@ca...> - 2011-12-22 22:35:59
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Dear potential COMBINE attendees, We recently ran a survey to identify the best dates to hold COMBINE 2012. Based on the votes received, the following is the winning combination: Wednesday August 15 (all day) to Sunday Aug. 19 (morning half-day), 2012 As the attached table shows, this combination of dates was voted both (a) good/best by the most people and (b) "impossible" by the fewest people. We thank all of the people who took the time to fill out the date survey, and we hope to see everyone in Toronto, Canada, at COMBINE 2012 and ICSB 2012! Best regards, Mike, Gary, Nicolas |
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From: Nicolas Le N. <le...@eb...> - 2011-11-19 23:45:32
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Dear Colleagues, The third COMBINE forum, COMBINE2012, is planned to be a satellite of the 13th ICSB that will take place in Toronton on August 19-23. In order to choose the best possible dates, we would like to have your opinion. Please help us by filling the very short survey at: http://www.surveymonkey.com/s/combine-2012-date-survey The COMBINE coordinators Gary Bader Michael Hucka Nicolas Le Novère _______________________________________________ Combine-announce mailing list Com...@eb... http://listserver.ebi.ac.uk/mailman/listinfo/combine-announce |
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From: Nicolas Le N. <le...@eb...> - 2011-11-16 00:09:14
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Dear Colleagues, We have the pleasure to announce that the 2nd joint COMBINE hackathons, HARMONY 2012, will take place in Maastricht on May 21 to 25 2012. More information will be posted on the following page as we go along. http://co.mbine.org/events/HARMONY_2012 Looking forward to see you all there, Nicolas LE NOVERE On the behalf of the COMBINE coordinators and HARMONY 2012 organizers _______________________________________________ Combine-announce mailing list Com...@eb... http://listserver.ebi.ac.uk/mailman/listinfo/combine-announce |
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From: Nicolas Le N. <le...@eb...> - 2011-09-17 17:37:45
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Dear Colleagues, Some of you may not have attended the last day of COMBINE2011, and may not be aware of new means of communication for this community. We set-up three mailing lists: To receive announcements from COMBINE, subscribe to: com...@mb... This list if very low flux, and members should not normally post on it. (Note that the main list of each of the core COMBINE standards is already subscriber, which is why you receive this message). To discuss the goals, organization and operation of COMBINE, subscribe to: com...@mb.... This list is open to all. To report issues about the co.mbine.org website, send a mail to com...@mb.... You cannot subscribe to this list, but only post message. Best regards, -- Nicolas LE NOVERE, Computational Systems Neurobiology, EMBL-EBI, WTGC, Hinxton CB101SD UK, Mob:+447833147074, Tel:+441223494521 Fax:468, Skype:n.lenovere, AIM:nlenovere, twitter:@lenovere http://www.ebi.ac.uk/~lenov/, http://www.ebi.ac.uk/compneur/ _______________________________________________ Combine-announce mailing list Com...@eb... http://listserver.ebi.ac.uk/mailman/listinfo/combine-announce |
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From: Stuart M. <stu...@ed...> - 2011-02-18 13:14:31
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The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. |
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From: Stuart M. <stu...@ed...> - 2011-02-14 12:28:20
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Dear Colleagues, A new minor release (Level 1 Version 1.3) of the SBGN PD Language Spec is now available from Nature Precedings: http://precedings.nature.com/documents/3721/version/3 This fixes a small number of issues raised in the tracker. Best wishes, Stuart Moodie (on behalf of the SBGN editors). -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. |
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From: Nicolas Le n. <le...@eb...> - 2011-02-08 11:23:54
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-------- Original Message -------- Subject: [sbgn-libsbgn] Announcement: Milestone 1! SBGN-ML 1.0, LibSBGN Java 1.0, LibSBGN C++ 1.0 beta Date: Mon, 31 Jan 2011 22:43:22 +0000 From: Alice Villeger <Ali...@ma...> Reply-To: libSBGN Development and Technical Issues <sbg...@li...> To: libSBGN Development and Technical Issues <sbg...@li...> Dear all, As agreed during our January EVO meeting, I am pleased to announce we have now reached Milestone 1! *** SBGN-ML1.0 *** Milestone 1 marks the official release of SBGN-ML1.0 The current version of the exchange format handles the semantics, syntactic relationships, and layout geometry of SBGN PD maps. The core of the specifications is enshrined in the XML schema and its accompanying documentation. Both are available in the release bundle under the following paths: - resources/SBGN.xsd - specifications/sbgn.doc/index.html The whole documentation has also been transcribed on a single wiki page: - http://sourceforge.net/apps/mediawiki/libsbgn/index.php?title=Exchange_Format For relevant examples of SBGN-ML files, please consult: - http://sourceforge.net/apps/mediawiki/libsbgn/index.php?title=SBGN-ML_Example_Files *** LibSBGN Java 1.0 *** Also part of the release: LibSBGN Java 1.0, the Java implementation of LibSBGN. The current version of the library can read and write SBGN-ML1.0 files, and perform partial validation. For complete instructions on how to install and use this tool, please check: - http://sourceforge.net/apps/mediawiki/libsbgn/index.php?title=Developer_tutorial *** LibSBGN C++ 1.0 beta *** Finally, the first public release of LibSBGN C++ can be found in the cpp_binding directory of the release bundle. The library is still in beta. It is reasonably functional: it can read and write SBGN-ML1.0 files, and perform basic validation based on the XSD. However, it hasn't been thoroughly tested yet, and only contains minimal documentation. A more complete version is in preparation. Stay tuned! *** Where to download? *** PLEASE NOTE: As some of you may have noticed, Sourceforge has recently been under attack: http://sourceforge.net/blog/sourceforge-attack-full-report/ The attack has been stopped, but the service is still somewhat disrupted: - the release bundles can't seem to get uploaded properly (the files get corrupted in the process) - the web version of the SVN repository is currently unaccessible (although the repository itself still works) Until things come back to normal, the release files will be listed here: http://sourceforge.net/apps/mediawiki/libsbgn/index.php?title=Main_Page#Download A snapshot of the bundle content can be found in the SVN repository, under tags/milestone1: svn co https://libsbgn.svn.sourceforge.net/svnroot/libsbgn libsbgn *** Licence *** SBGN-ML 1.0, LibSBGN Java 1.0 and LibSBGN C++ 1.0 beta are released under a dual licence: LGPL2.1 or any later version, and Apache 2.0 ------------------------------------------------------------------------------ Special Offer-- Download ArcSight Logger for FREE (a $49 USD value)! Finally, a world-class log management solution at an even better price-free! Download using promo code Free_Logger_4_Dev2Dev. Offer expires February 28th, so secure your free ArcSight Logger TODAY! http://p.sf.net/sfu/arcsight-sfd2d _______________________________________________ sbgn-libsbgn mailing list sbg...@li... https://lists.sourceforge.net/lists/listinfo/sbgn-libsbgn |
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From: Nicolas Le n. <le...@eb...> - 2011-01-05 16:24:37
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Dear colleagues, The SBGN project has now entered in the maturity phase. While the community of SBGN developers is of course discussing how to extend and improve the notation, there is now a growing community of SBGN users. Those want to be aware of the latest developments and news, but not necessarily follow very technical discussions or participate to votes on particular issues. This is why we created the sbgn-announce mailing list. This list is intended to be a very low flow one, with only posts from the project (i.e. SBGN editorial board and scientific committee). You will not be able to post on it. It will feature announcements for: * Forthcoming meetings * Forthcoming elections (although only sbgn-discuss members can vote) * Forthcoming decision votes (although only sbgn-discuss members can vote) * Noticeable news affecting SBGN user community sbgn-discuss will continue to be used for discussions related to SBGN development. To start with, we subscribed all the members of sbgn-discuss to sbgn-announce. You can now decide if you want to stay on both lists or not. Best regards, -- Nicolas LE NOVERE, Computational Systems Neurobiology, EMBL-EBI, WTGC, Hinxton CB101SD UK, Mob:+447833147074, Tel:+441223494521 Fax:468, Skype:n.lenovere, AIM:nlenovere, twitter:@lenovere http://www.ebi.ac.uk/~lenov/, http://www.ebi.ac.uk/compneur/ |
