#27 SBML2SBML V3L1

[Nilay Yönet]

Hi,

I saw some bug reports related to this issue, and I suppose it is the same maybe for 3 years or so. But I wanted to try my chance.

I am trying to convert my SBML L2V4 file into a L3V1 version. When I try it on the SBFC online converter, I get the error below:

The converter SBML2SBML you asked for can not be found...

java.lang.ClassNotFoundException: org.sbfc.converter.SBML2SBML
    at java.net.URLClassLoader.findClass(URLClassLoader.java:387)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:418)
    at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:352)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:351)
    at java.lang.Class.forName0(Native Method)
    at java.lang.Class.forName(Class.java:264)
    at org.sbfc.converter.Converter.convertFromFile(Converter.java:167)
    at org.sbfc.converter.Converter.convertFromFile(Converter.java:138)
    at org.sbfc.converter.Converter.main(Converter.java:305)

Then I installed the standalone version and libSBML, though I am not sure whether I configured it correctly. Java version of my system is 1.8.0_152-release. My command is below:

./sbml2sbml.sh MyModel.xml L3V1

The error is:

The converter SBML2SBML you asked for can not be found...

java.lang.ClassNotFoundException: org.sbfc.converter.SBML2SBML
        at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
        at java.lang.Class.forName0(Native Method)
        at java.lang.Class.forName(Class.java:264)
        at org.sbfc.converter.Converter.convertFromFile(Converter.java:159)
        at org.sbfc.converter.Converter.convertFromFile(Converter.java:130)
        at org.sbfc.converter.Converter.main(Converter.java:297)

Any idea how can I figure it out?