#14 SBML2SBML

[Ana Nascimento]

Hi,

I am trying to convert an SBML L3V1 to an SBML L2V1 in the SBFC Online and the site returns the following error:

The converter SBML2SBML you asked for can not be found...

java.lang.ClassNotFoundException: org.sbfc.converter.SBML2SBML
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:264)
at org.sbfc.converter.Converter.convertFromFile(Converter.java:167)
at org.sbfc.converter.Converter.convertFromFile(Converter.java:138)
at org.sbfc.converter.Converter.main(Converter.java:305)

Also, I downloaded the standalone version, but the SBML2SBML option did not appear in the GUI. Even when I tried run the .sh, I got the same error message. I am using Linux Mint 19, Java 1.8 and I changed the ld_library_path to the path containing libsbml.

I need some help, please.

[Nicolas Rodriguez]

Hi Ana,

I thought the online converter was fixed by somebody else but it seems that this problem is still there.

For the standalone version, you need to have libSBML installed and properly configured so that the GUI display the SBML2SBML converters.