#12 SBML2SBML conversion

[Anonymous]

Hello,

I am trying to convert a SBML3 file to SBML2V4 using the sbml 1.3.7 version with the code:

./sbml2sbml.sh Model.xml L2V4

But I keep getting an empty Model.xml.out and an error log file with the message:

"The converter SBML2SBML you asked for can not be found...

java.lang.ClassNotFoundException: org.sbfc.converter.SBML2SBML
at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
at java.lang.ClassLoader.loadClass(ClassLoader.java:419)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:352)
at java.lang.ClassLoader.loadClass(ClassLoader.java:352)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:264)
at org.sbfc.converter.Converter.convertFromFile(Converter.java:159)
at org.sbfc.converter.Converter.convertFromFile(Converter.java:130)
at org.sbfc.converter.Converter.main(Converter.java:297)"

Kindly advice on how to resolve this.

[Nicolas Rodriguez]

Which version are you trying to run ? Is it a svn checkout ? Did you compile it yourself ? Which operating system do you use ?

To have the sbml2sbml converters working, you need to have libsbml installed locally on the machine you are trying to run sbfc. You might need to adjust the path in the script so that the libsbml libraries are found.