Re: [Samtools-help] bcftools index Segmentation fault

[Thomas W. B. <tb...@um...>]

I would try downloading the file and indexing your local copy. 
Unless I'm mistaken, nothing in the bcftools documentation 
indicates that it should work over an http: connection.

 	 	 	 	 	 	-  tom blackwell  -

On Mon, 22 Aug 2016, Yuelin Zhu wrote:

> Dear all,
>
> I got Segmentation fault whenever doing bcftools index on the following
> file:
>
> http://gbnci-abcc.ncifcrf.gov/fileman/temp/1348518/geno.TRA.bcf
>
> $ which bcftools
>
> /usr/local/apps/samtools/1.3.1/bin/bcftools
>
> $ bcftools index geno.TRA.bcf
>
> Segmentation fault
>
> Your insight will be greatly appreciated.
>
> Jack
> ----
> Yuelin Jack Zhu
>